Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0631 ATGGAGACTCCTCATTCTCCTTCTTCCTCTTCTGAAAGGGACCCCACTTTCGAACCCAGGACGCCGATAGCAGTACGCCGTGCGTTACAGTTTCTGAACTCCGATGAGCCACAGATGAGGGTCCAAGCCGCCCGTGACATACGGCGGCTTACGAAGACGTCTAGACGGTGCCGCCGACAGCTTGCGGAAGCTGTTGGCCCACTCGTGTCGATGCTCCGAGTCGACTCGCCCGAGTCACATGAACCCGCTCTCCTCGCTTTGCTTAATCTCGCCGTTAAAGACGAAAAGAATAAAATAAACATTGTAGAGGCTGGTGCATTAGAACCAATGATTAAATTCCTCAAATCAGAAGATCTAAATCTTCAGGAGTCTGCAACTGCAGCTTTGCTCACACTATCTGCCTCTTCAACCAACAAACCAATTATCAGTGCTTGTGGTGCCATTCCTCTTCTTGTGGAAATTCTTAAAGAAGGAAGTTCACAAGCTAAATCTGATGCAGTAATGGCTCTCTCTAATTTATCAACACACCCTGATAACTTCAGCATCATACTTGGAACAAATCCAACCACTTTTATAGTTAATATCCTTAAAGCCTGCAAAAAGTCCTCAAAAACAGCTGAAAAATGTTGTGTTTTGATTGAATCCTTGGTGGGTTATGATGAAGGAAGAACTTCATTAACTTCTGAAGAAGGTGGGGTTCTAGCAGTTGTTGAAGTTCTTGAAAGTGGCACTCTCCAAAGTAAGGAACATGCTGTTGGAGCATTATTGACAATGTGCAACAGTGACAGATGTAAATACAGAGAACCAATTCTTAGGGAAGGTGTTATTCCAGGACTTCTTGAGCTTACTGTTCAAGGAACAGCAAAGTCTCAAACAAAAGCAAGAACCCTTTTGCAGTTACTAAGAGAATCTCCATACCCAAGATCTGAAATTCAACCTGACACACTTGAGAATATTGTATGCAACATCATATCACAGATTGATGGGGATGATCAATCTAACAAAGCAAAGAAAATGCTGGTTGAGATGGTCCAAGTCAGCATGGAACAGAGTTTGAGACATTTGCAGCAAAGGGCTCTTGTATGCACCCCTAATGATCTGCCCATAGCTGGCTGTGCTTCTGAAGTTCCGTCGAAATGA 1140 0.4386 METPHSPSSSSERDPTFEPRTPIAVRRALQFLNSDEPQMRVQAARDIRRLTKTSRRCRRQLAEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPMIKFLKSEDLNLQESATAALLTLSASSTNKPIISACGAIPLLVEILKEGSSQAKSDAVMALSNLSTHPDNFSIILGTNPTTFIVNILKACKKSSKTAEKCCVLIESLVGYDEGRTSLTSEEGGVLAVVEVLESGTLQSKEHAVGALLTMCNSDRCKYREPILREGVIPGLLELTVQGTAKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSNKAKKMLVEMVQVSMEQSLRHLQQRALVCTPNDLPIAGCASEVPSK* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0631 379 Pfam Armadillo/beta-catenin-like repeat 138 174 IPR000225 GO:0005515
Lan16g0631 379 Pfam Armadillo/beta-catenin-like repeat 95 133 IPR000225 GO:0005515
Lan16g0631 379 Gene3D - 115 196 IPR011989 -
Lan16g0631 379 SUPERFAMILY ARM repeat 26 330 IPR016024 -
Lan16g0631 379 SMART arm_5 54 92 IPR000225 GO:0005515
Lan16g0631 379 SMART arm_5 135 175 IPR000225 GO:0005515
Lan16g0631 379 SMART arm_5 94 134 IPR000225 GO:0005515
Lan16g0631 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 105 147 IPR000225 GO:0005515
Lan16g0631 379 PANTHER U BOX DOMAIN-CONTAINING 6 359 - -
Lan16g0631 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 179 IPR000225 GO:0005515
Lan16g0631 379 Gene3D - 20 114 IPR011989 -
Lan16g0631 379 Gene3D - 197 357 IPR011989 -
Lan16g0631 379 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0631 Lan-Chr16 8065090 8071047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0631 6 302 U-box Gene Family AT2G23140 31.104 3.24e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0631 - - gmx:100780954 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0192 4 3201788 3205575 Lan16g0631 16 8065090 8071047 LSH