Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0618 ATGGCTTCTTTGGATATGTCACTTGATGATAGAATTAAGAACAGGAGTAGCAGAGGGAGAGGCAGAGGACGTGGAAGAGCTGGCTCTGGCCGTGGACCAAGCAGGACCTTCAATGGTGGAAGAGTGTCTAGTGCTGCTAATGGTCGAAGAATGACGGGTGCTGCTCGTAGAGGTCGAGGTCCTCTTGTGCTTAATGCTCGGCCATCATCTTATGCTATTGCCAAGTCTATTCGTGGAACCAGGCCTTTTCCATGGCAGCGTACTGATTTGTTTGAAGATAGCCTAAGAGCTGTAGGGATACCTGGAATTGAAGTCGGCACCAAGTTGTATGTTTCCAACTTGGATCATGGAGTAACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGATTTGAAGCGGTATGCTGTTCATTATGACAAAAATGGGCGTCCAAGTGGCTCAGCTGAAGTTGTCTATACTAGAAGAAGTGATGCTTTTGCTGCCCTTAAAAGATATAATAATGTACTTTTGGATGGTAAACCCATGAAGATTGAGATTGTTGGTGCCGATGCAGAGTTACCTATAACTGCTCGTGTGAATGTCACTGGGGTAACCGGGAGGAGGAAAAGGACAGTTGTAATGGCGCCTAGAAGTAGTGGAGCTGTAGGTCCTGCTGCTGTGCCAAATCGTGGCCTTGGTTGGGGACGACGAGGTGGCCCCAAGATTGGGAGTGGTGGCCCCAGGAATTGGAACGGAAGTGGTCGTGGCAGGGGTGGAGGACGTGGCAGGGGTGGTGGCCGAGGTCGTGGGAAAAAGGATGGCGGTGAGAAGTCCGCCGAGCAACTTGACAAGGAACTGGAAACATATCATGCCGAGGCCATGAACATCTCATGA 879 0.496 MASLDMSLDDRIKNRSSRGRGRGRGRAGSGRGPSRTFNGGRVSSAANGRRMTGAARRGRGPLVLNARPSSYAIAKSIRGTRPFPWQRTDLFEDSLRAVGIPGIEVGTKLYVSNLDHGVTNEDIRELFSELGDLKRYAVHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGADAELPITARVNVTGVTGRRKRTVVMAPRSSGAVGPAAVPNRGLGWGRRGGPKIGSGGPRNWNGSGRGRGGGRGRGGGRGRGKKDGGEKSAEQLDKELETYHAEAMNIS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0618 292 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 3 291 - -
Lan16g0618 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Lan16g0618 292 SMART rrm1_1 108 180 IPR000504 GO:0003723
Lan16g0618 292 MobiDBLite consensus disorder prediction 211 292 - -
Lan16g0618 292 PANTHER THO COMPLEX SUBUNIT 4C 3 291 - -
Lan16g0618 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 177 IPR000504 GO:0003723
Lan16g0618 292 SMART FoP_duplication_2 223 292 IPR025715 -
Lan16g0618 292 Pfam C-terminal duplication domain of Friend of PRMT1 232 286 IPR025715 -
Lan16g0618 292 CDD RRM_THOC4 107 181 - -
Lan16g0618 292 MobiDBLite consensus disorder prediction 261 285 - -
Lan16g0618 292 Gene3D - 102 277 IPR012677 -
Lan16g0618 292 MobiDBLite consensus disorder prediction 1 61 - -
Lan16g0618 292 SUPERFAMILY RNA-binding domain, RBD 22 181 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0618 Lan-Chr16 7743594 7749385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0618 106 261 Eukaryotic Initiation Factors Gene Family AT1G71770 26.282 4.98e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0618 K12881 - gmx:100801491 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0200 4 3324291 3329238 Lan16g0618 16 7743594 7749385 LSH