Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0615 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGAGTGCAGAAGAAGATAAGAAGCTTATCAACTTCATCCTCACTAATGGCCAATTTTGCTGGAGAACTGTACCTAAGTTAGCAGGTCTTTTAAGGTGTGGGAAAAGTTGCAGGCTCAGATGGACAAATTACCTCAGGCCAGACCTCAAAAGAGGTCTTCTATCAGAAGATGAGGAGAAAATGGTCATTGACCTCCATGCTCAACTTGGCAATAGATGGTCTAAGATTGCTTCTAATCTCCCCGGAAGAACTGATAATGAAATCAAGAATCACTGGAATACTCATATAAAGAAAAAGCTCAAGAAAATAGGAATTGATCCTGTTACTCATAAGCCACTCCCTAATGCAGTTGTGCAAACTCAAACCCAACCACATCAACCATGTCAAGAACAACATCAGAAACTATGTTTACCAGTTAACCAGGACCCAAAATTTGAACCTGAAAGTGACCACGATAAAGAGCCAGAAACTTCATTTGAGTCATCAACTTTAACTGAAGCTATAGAAGACAAAACTATAACACCTTCATTTGACTCAATAATGGATGAGTTCTGCATAGATAAAGTTCCAATAATAGAATCCAATAAGATTCTTGTTCCACATGCTTCATCCACTTCTTCAAAATCATCAAACTTCATTGAAGACTTGCTGCTCCCAGATTTTGAGTTGTCTCCAAACAATGAAAATAATAATATTAATAGCAATGTCAACAACAATAGGAGCATGGCATTATGGGATGATGACTTTATTAATGGTTGGGATTTCCTGGTAAATGATGATGGTGGCGACCCAAGAATAATCATGGATTCAAAATCATGGAACTATGGCTTGTTTTAG 885 0.3831 MGRQPCCDKVGLKKGPWSAEEDKKLINFILTNGQFCWRTVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEDEEKMVIDLHAQLGNRWSKIASNLPGRTDNEIKNHWNTHIKKKLKKIGIDPVTHKPLPNAVVQTQTQPHQPCQEQHQKLCLPVNQDPKFEPESDHDKEPETSFESSTLTEAIEDKTITPSFDSIMDEFCIDKVPIIESNKILVPHASSTSSKSSNFIEDLLLPDFELSPNNENNNINSNVNNNRSMALWDDDFINGWDFLVNDDGGDPRIIMDSKSWNYGLF* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0615 294 CDD SANT 16 61 IPR001005 -
Lan16g0615 294 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 276 - -
Lan16g0615 294 SMART sant 66 114 IPR001005 -
Lan16g0615 294 SMART sant 13 63 IPR001005 -
Lan16g0615 294 CDD SANT 71 111 IPR001005 -
Lan16g0615 294 PANTHER MYB TRANSCRIPTION FACTOR 1 276 - -
Lan16g0615 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan16g0615 294 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan16g0615 294 Gene3D - 71 150 - -
Lan16g0615 294 MobiDBLite consensus disorder prediction 160 175 - -
Lan16g0615 294 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan16g0615 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan16g0615 294 Gene3D - 11 67 - -
Lan16g0615 294 MobiDBLite consensus disorder prediction 156 179 - -
Lan16g0615 294 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan16g0615 294 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lan16g0615 294 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0615 Lan-Chr16 7621792 7624409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0615 1 294 MYB Transcription Factor Family AT1G66230 52.366 1.14e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan16g0615 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0615 K09422 - gmx:100803624 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0202 4 3368971 3371992 Lan16g0615 16 7621792 7624409 LSH
Lan11g0309 11 2003492 2005568 Lan16g0615 16 7621792 7624409 PCT
Lan9g1281 9 20014021 20025099 Lan16g0615 16 7621792 7624409 PCT