Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0604 ATGACTAGAAAGAAGGTGAAACTCGCATTCATAGTGAATGATGCATCAAGAAAGGCAACATACAAGAAAAGGAAGAAGGGTCTAATGAAGAAAGTTGGTGAACTTAGCACCCTTTGTGGGATTGATGCCTGTGCTATAGTTTATAGCCCTTATGATCCTCAACCTGAGGTTTGGCCATCACCAATAGGAGTACAAAGGGTGCTTGCGAAGTTTAGGAGAATGCCGGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGATAGTTTTTTGAGACAGAGGATCCTAAAGGCGAAAGAGCAAGTTAAGAAGCAGAGTAAAGATAATAGGGAGAAGGAGATTACTCAGGTCATGTTTCAATGCCTTAGCGCAGGTAAAATTCTACCGAATATAAGCATGGTTGATTTGAATGATCTTGCTTGGTTGATTGACCAAAACTTGAAGGACATTAATCGAAGGATTGAAACATTGACGAAGAAGGCGCAAAGCCAAGCTCAAATTGTTGCACCTGTGGTGCCTGATGTAGCAGCTAAGATTGAAGAGAAGGAAGAAGGGTGTCACGGAAATGGGTTGGATTTGGATATGAACATTGATGCCATGGAGAAGCAGAATTGGTTCACCAATTTGTTGAATAATGGTGGTGGTGATGAAGCATTGCCATTTGGAGATGTTAATCATTCAAATGGTTTTTGGCCTAACTCATTTTTCCATTGA 711 0.4093 MTRKKVKLAFIVNDASRKATYKKRKKGLMKKVGELSTLCGIDACAIVYSPYDPQPEVWPSPIGVQRVLAKFRRMPELEQSKKMVNQDSFLRQRILKAKEQVKKQSKDNREKEITQVMFQCLSAGKILPNISMVDLNDLAWLIDQNLKDINRRIETLTKKAQSQAQIVAPVVPDVAAKIEEKEEGCHGNGLDLDMNIDAMEKQNWFTNLLNNGGGDEALPFGDVNHSNGFWPNSFFH* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0604 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lan16g0604 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 175 - -
Lan16g0604 236 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lan16g0604 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan16g0604 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan16g0604 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan16g0604 236 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lan16g0604 236 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 175 - -
Lan16g0604 236 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan16g0604 236 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0604 Lan-Chr16 7411810 7412693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0604 1 156 Type I MADS-box Gene Family AT5G48670 66.667 1.42e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan16g0604 SRF-TF 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0604 - - gmx:100813231 379.022