Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0603 ATGAAACCAATCTTTGATCTTGAAGTGGAGGCCACAGCAGAATATGAATCTGAGTTTAGCAGCCATGTTGCTTTCAATATTAATGAAACCACTACAGGGCCATGTAGTGACACCTTCACCAACTCTTCTAATGTCACAAATCCAATAGAGATTCATCCTCTTTCAGATGCTATCTCACTTGAGTTAACACTCAACTTCAACAGTAATGAGATAGGGGCAAGAGATTTAATAGGACTCTCATTCTCAAGCACTAGTGAGAGCAGCAATGAACTAGCTTCTCAAACTACTGCAGCAACCATTCCAAGACTTTTCCCCTGCAATTACTGTCAGCGCAAATTCTATAGCTCGCAAGCACTCGGTGGCCACCAAAATGCACACAAGAGAGAAAGAACATCGGCGAAGCGAGCAATGCGGATGGGCCTCATTTCTGAGAGGTATGCTAGCTTAGCATCTCTCCCTTTGCATGGTTCTTTCGGTTCCTTAGGGATAAAGACACACTCTTCGCTGCACCATGGATTTTCGGATTTTTCGCCAGCAATAAGGCCCACTGAGATAAAAAGCAATGCAAGAGTTGAGCAAGGATATCTCAGCCTTCCAATATTCTTGGAGGATGATGAGGCAGAACTGTTGTGGCCTGGTAGCTTCCATCAGAAAAGTGATTCTCATCAAAATTTCTTATTGACTGCTGGAAGTTCAAGTTTGAGTTTTTCTGAGGTGCATCCACCACTTGATATAGAGAAATCGGCACCCGAATTAACATTGAAACTTTGA 771 0.4293 MKPIFDLEVEATAEYESEFSSHVAFNINETTTGPCSDTFTNSSNVTNPIEIHPLSDAISLELTLNFNSNEIGARDLIGLSFSSTSESSNELASQTTAATIPRLFPCNYCQRKFYSSQALGGHQNAHKRERTSAKRAMRMGLISERYASLASLPLHGSFGSLGIKTHSSLHHGFSDFSPAIRPTEIKSNARVEQGYLSLPIFLEDDEAELLWPGSFHQKSDSHQNFLLTAGSSSLSFSEVHPPLDIEKSAPELTLKL* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0603 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Lan16g0603 256 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 256 - -
Lan16g0603 256 SUPERFAMILY beta-beta-alpha zinc fingers 102 131 IPR036236 -
Lan16g0603 256 Gene3D Classic Zinc Finger 80 151 - -
Lan16g0603 256 PANTHER ZINC FINGER PROTEIN JAGGED 1 256 IPR045320 GO:0003700
Lan16g0603 256 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0603 Lan-Chr16 7402438 7405371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0603 86 256 C2H2 Transcription Factor Family AT1G66140 48.515 1.13e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan16g0603 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0603 - - lang:109345142 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0217 4 3560008 3562770 Lan16g0603 16 7402438 7405371 LSH
Lan16g0603 16 7402438 7405371 Lan11g0323 11 2109895 2112307 PCT
Lan11g0323 11 2109895 2112307 Lan16g0603 16 7402438 7405371 PCT