Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0592 ATGACAATGGGTGAAGACTCTTTAGCACCATTCACATTTGACAGAACTGTTGAACAGGCAATTATATCTATAAAGAAAGGTGCATATTTACTTAAATGTGGTCATCGAGGAAAACCAAAGCTCTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATTTGGTACTCCGGGCAGCAGGAAAAGCATTTGCGACTGAGTGCAGTTACTGAAATTATTCAAGGGCAGAGTAATATCAGGTCCCATGGGCATGAGGAGCATGGAAAGGATAGCCATTCATTTTCGCTAATCCATGCTAATGGTGAACGCTCTCTTGATCTGATATGCAAGGATAAAGCACAGGTTGCTTTGTGGTTTGTTGGCTTGAAAGCAGTGATTTCTAGGTGCCAGCATCCTAAACCTTTTAGTAGTTTAAGAAGCTGCAAAGGGGTTCAGAGTTGTGTTAGTAGTCCAGCTGGAATCTTCCGAAGAAAGAAAAATCTCGGCCTTCTGGATGAGTCTTCTCAATTTACACAGGTACATAGCGTATGTGCAAGTCCTACTTTGTCACTTTCAGAGAGGTGTTTTTCTGATGGATTTTCGTATACATCTGATAACATTTATTCCAGAACTCAAGCTGTTGTAGATAATTCAGTCCCGAGTTCGCCATACATCAATCCAGATATTCCTAGCAAGGTTGACTCCCTACATCTTCACAAGGAGTACAAGAAGAATTTGTCCTATAGGCCTCTGATGCCTCCACCCTCCCCGCGTATACGAAATAACAATGTATTAAAGGATGTGATGGTATGGGGAGGAGGGATTGGAGGTCCTTTAGGGATTGGGAATGAGAGGTTTGTCGACCAACATGGAATTTATTCTTTAGTTCCGAAGTTACTGGAATCCACTATGATGTTAGATGTACAAAATATAGCTCTAGGGGGAAAACATGCTGTTTTGGTTACAAAACAAGGGGAAGTGTTCTGTTGGGGTCAAGGGAAGTGGGGAAGGTTGGGGCAAAAAATTGATATTGACATTAGCTCTCCGAAAATAGTTGATTCTCTTAACGGTATCCATGTTAAAAATGTTGCATGCGGTGAGTACCATACATGTGCTTTGACTGATTCAGGTGAAGTATATACATGGGGAAATGATGCTTGTAGTGCAGATTTGGCTGATGAATTGAGAAATAGAAGTCAGTGGATACCGCATAAACTTTCTGGTCCTTTAGATGGTATTGCTATATCAAGTGTTGCTTGTGGGGAATGGCATACTGCAATTGTCTCCATCTGTGGGCGGTTATTTACGTATGGAGAAGGTACATTTGGCGTTCTTGGCCACGGCGATACTAGGAGTTTTTCTCAGCCAAAAGAAGTCGATTCTCTGAGTGGTCTAAAGGTGAGGTCTGTTGCTTGTGGATCGTGGCATACAGCCGCTATCGTAGAAGTCATTGCCGACCATTTTAGGTATAATACTGCAAGTGGAAAGCTTTTTACTTGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGATAATAGAAGCAAACTTATGCCGACATGTGTTTCGCAGCTTGTCGACTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACCGTTGCACTTACTACTATGGGCAAAGTTTTTGTAATGGGAAGTGCAAAATTTGGACAATTGGGAAATCCACATGCTAGGGGCAAAGCAGTTATGGTTGAAGGACTTCTGAAAAAAGAGTTTGTTAAAGTGATATCATGTGGTTCATATCATGTTGCTGTGTTGACTTCTGCGGGGAGTGTCTATACATGGGGCAAAGGTGAAAATGGCCAACTCGGGCTAGGAAATACCGAAGACAGATACACACCTTCTTTTGTTGAAACACTAAGAAATAGGCAGGTAGATACAATAACTTGCGGCCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATCAGTGACCAATCAGCATGTAGTAGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGTTATAACTGTGGTCTTCTATTCTGCCATGCTTGTAGTAGTAAAAAGGCTTTAAATGCATCACTAGCCCCAAGTAAGTGCAAGGCTTTTCGGGTTTGTGATCAGTGCTTCGATAAACCTCAAGGAAGTACATATTCTGGAATTGCATCAAAGTCTGGAAGTTACAACACTCAACAGGTACTGAAGCATCAAAACAAAATCCCCGATCTGACTGAAGATAGGGGAGAAATAAAAGTAGCACAGAGTGTGATGTCTCTCGGTCAATCATGTTACAGGAAAAGCATGCCAAGTGGACGGAAGGACTGGAAAAACCAACAGGAAAGCCAGCAGCATTTAGAAGATAATTCTTCTGTGTTGGGTGGAGTACCGCGATGGGGGAAAGTTCCGTGCCCTAATTCGTTTAACATCAATTGTACAGAACGTTCAGTTATGCGTGTTTCTTCATCCAAAAATAAATTAGCCACTGTTTCACCAATGGAAATAGAATCTGCAGCATGCAACTTCCCTATTGCTGAGACAGATACAACAAAGTCTGATAAGATGCTCATAGAAGAAGTTCAAAGGCTGGGAGCTGAGGCTAGAAGACTAGAAGAGCAGATTGAGCTCAAAAACCAAAAAATACAAGAGTGTCAACAAAAACTCGAGGAGAGTTGGCTTGTGGCTAAGGAGGAAGCTGCTAAGAGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGTTCTCATTGTTGCAGCTTCATACATTATCAGGAAAAGATAATGCTGGACAAGAAGAAAAGGTTATACATGAATGTCTGCCTAATTTGGCTCACATACAAACAGATATCAAGAGTCCGAAAGTTAGTAACATGGACAGTCTATCAAATTCGCCTATAATATTTTCTGATACACTAAAATCCAAATTAGGGAGAAGCATGCTCCTTAAAAATGATAAATTATTGGAGAACTCGAACTTCGATAGAGCAGAACCACAAGTAGACAGCAACAACTTGAAGGCTGAATGGGTAGAACAATATGAGCCTGGTGTTTACATCACATTAACAACCTTATCGTGTGGAAAAAAGGGTCTTAAGCGAGTGAGATTTAGCCGGAAAAGATTTTCGGAGAAGGAAGCTGAAAAATGGTGGGAAGGGAATCAAGCCACAGTCTACCAAAAGTATGATATTGAAGGGTATACAGATACTAGACAAAGTTGA 3204 0.4139 MTMGEDSLAPFTFDRTVEQAIISIKKGAYLLKCGHRGKPKLCPFRLSPDERNLIWYSGQQEKHLRLSAVTEIIQGQSNIRSHGHEEHGKDSHSFSLIHANGERSLDLICKDKAQVALWFVGLKAVISRCQHPKPFSSLRSCKGVQSCVSSPAGIFRRKKNLGLLDESSQFTQVHSVCASPTLSLSERCFSDGFSYTSDNIYSRTQAVVDNSVPSSPYINPDIPSKVDSLHLHKEYKKNLSYRPLMPPPSPRIRNNNVLKDVMVWGGGIGGPLGIGNERFVDQHGIYSLVPKLLESTMMLDVQNIALGGKHAVLVTKQGEVFCWGQGKWGRLGQKIDIDISSPKIVDSLNGIHVKNVACGEYHTCALTDSGEVYTWGNDACSADLADELRNRSQWIPHKLSGPLDGIAISSVACGEWHTAIVSICGRLFTYGEGTFGVLGHGDTRSFSQPKEVDSLSGLKVRSVACGSWHTAAIVEVIADHFRYNTASGKLFTWGDGDEGRLGHADNRSKLMPTCVSQLVDYDFVQVSCGRMLTVALTTMGKVFVMGSAKFGQLGNPHARGKAVMVEGLLKKEFVKVISCGSYHVAVLTSAGSVYTWGKGENGQLGLGNTEDRYTPSFVETLRNRQVDTITCGPSFTAAICLHKPISISDQSACSSCRLPFGFTRKKHNCYNCGLLFCHACSSKKALNASLAPSKCKAFRVCDQCFDKPQGSTYSGIASKSGSYNTQQVLKHQNKIPDLTEDRGEIKVAQSVMSLGQSCYRKSMPSGRKDWKNQQESQQHLEDNSSVLGGVPRWGKVPCPNSFNINCTERSVMRVSSSKNKLATVSPMEIESAACNFPIAETDTTKSDKMLIEEVQRLGAEARRLEEQIELKNQKIQECQQKLEESWLVAKEEAAKSKAAKEVIKALALRFSLLQLHTLSGKDNAGQEEKVIHECLPNLAHIQTDIKSPKVSNMDSLSNSPIIFSDTLKSKLGRSMLLKNDKLLENSNFDRAEPQVDSNNLKAEWVEQYEPGVYITLTTLSCGKKGLKRVRFSRKRFSEKEAEKWWEGNQATVYQKYDIEGYTDTRQS* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0592 1067 SUPERFAMILY FYVE/PHD zinc finger 648 710 IPR011011 -
Lan16g0592 1067 PANTHER F12P19.9 PROTEIN 16 1059 - -
Lan16g0592 1067 SUPERFAMILY PH domain-like 16 126 - -
Lan16g0592 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 716 IPR013083 -
Lan16g0592 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 425 476 IPR000408 -
Lan16g0592 1067 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 647 709 IPR017455 -
Lan16g0592 1067 Pfam Transcription factor regulating root and shoot growth via Pin3 1001 1056 IPR013591 -
Lan16g0592 1067 ProSiteProfiles BRX domain profile. 1002 1057 IPR013591 -
Lan16g0592 1067 Gene3D - 16 133 IPR011993 -
Lan16g0592 1067 CDD FYVE_like_SF 652 705 - -
Lan16g0592 1067 Gene3D - 385 476 IPR009091 -
Lan16g0592 1067 Gene3D - 252 384 IPR009091 -
Lan16g0592 1067 Gene3D - 477 643 IPR009091 -
Lan16g0592 1067 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Lan16g0592 1067 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 463 473 IPR000408 -
Lan16g0592 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 424 IPR000408 -
Lan16g0592 1067 Pfam FYVE zinc finger 649 707 IPR000306 GO:0046872
Lan16g0592 1067 SUPERFAMILY RCC1/BLIP-II 259 643 IPR009091 -
Lan16g0592 1067 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1059 - -
Lan16g0592 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 369 IPR000408 -
Lan16g0592 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 487 536 IPR000408 -
Lan16g0592 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 425 473 IPR000408 -
Lan16g0592 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 591 639 IPR000408 -
Lan16g0592 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 318 366 IPR000408 -
Lan16g0592 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 488 539 IPR000408 -
Lan16g0592 1067 PRINTS Chromosome condensation regulator RCC1 signature 260 276 IPR000408 -
Lan16g0592 1067 PRINTS Chromosome condensation regulator RCC1 signature 320 336 IPR000408 -
Lan16g0592 1067 PRINTS Chromosome condensation regulator RCC1 signature 370 386 IPR000408 -
Lan16g0592 1067 PRINTS Chromosome condensation regulator RCC1 signature 411 427 IPR000408 -
Lan16g0592 1067 PRINTS Chromosome condensation regulator RCC1 signature 427 441 IPR000408 -
Lan16g0592 1067 PRINTS Chromosome condensation regulator RCC1 signature 529 547 IPR000408 -
Lan16g0592 1067 PRINTS Chromosome condensation regulator RCC1 signature 586 607 IPR000408 -
Lan16g0592 1067 CDD PH_PLC_plant-like 15 127 - -
Lan16g0592 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 591 642 IPR000408 -
Lan16g0592 1067 Coils Coil 847 881 - -
Lan16g0592 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 540 590 IPR000408 -
Lan16g0592 1067 SMART fyve_4 641 710 IPR000306 GO:0046872
Lan16g0592 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 259 317 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0592 Lan-Chr16 7143723 7151289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0592 903 1061 Major Intrinsic Protein MIP AT1G31880 26.667 3.19e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0592 - - adu:107481014 1670.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0231 4 3782405 3789652 Lan16g0592 16 7143723 7151289 LSH