Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0590 ATGGAGAATTGGAGATGTGGAGTCAGTGATTTGCATCTACCACTGTTCAGTGTTCACTACATCTTCTCTCTCTATCTTCACACACTCAAACTCATTACACAAAAAAAAATGTCATATACTATATTAATCTTCATCATCACACTATTCTCCACACTCATTTCACCAACCACCTCTCTCTACTCTTCCCCATCTCCTCCCGCCGCCCCATTTTCCTCCTCCTCCTCCGCCCCACTCCCCTCTCCCACCACTGAATGGCTCTCCGCCCACGCCACCTACTACACTCCCGCCGACCCCATCCCCACCCTCGGCGGCGCGTGCGGCTACGGCGACCTCCTCAAACAAGGCTACGGCAAGGCTTCCGTGAGCCTCAGTGAGGCCCTCTTCCAACGCGGCCAGATCTGCGGCGCGTGCTTTGAGCTGCGGTGTGCTGAGGAGGAGACCAGTTTCGACCGACGGTGGTGCATCCCAGGCACCTCCGTCGTTGTAACTGGTACTAATTTCTGCGCACCGAATTATGGCCTTGACGCTGAGAGTGGTGGTGGGAAGTGTAACGAACCGAAGCAACACTTTGTGGTTCCCATTGAAACGTTTGAGAAGATTGCAATCTGGAATGCTGGTAATATGGCCGTACAGTATCGCAGGGTAAAGTGCAGAAGGGATGGAGGAATCCGATATACGATAACTGGTTCCGGCATCTTCATTTCTGTGCTAATTAGCAATGTGGGTGGCATTGGAGACATTGTTGGTGTGAAGGTTAAGGGTTCAAGAACTGGTTGGCTTCCTTTGGGTCGAAATTGGGGACAAAATTGGCATGTAAGTGCATTACTACAGAATCAACCTCTTTCATTTGAGGTTACTAGTAGTGATGGGATAACAGTTACATCTTACAATGTTGCTCCTAAGGATTGGAGCTTTGGCCAAACCTTTGAAGGCAAGCAATTTGAGTCTTGA 951 0.4984 MENWRCGVSDLHLPLFSVHYIFSLYLHTLKLITQKKMSYTILIFIITLFSTLISPTTSLYSSPSPPAAPFSSSSSAPLPSPTTEWLSAHATYYTPADPIPTLGGACGYGDLLKQGYGKASVSLSEALFQRGQICGACFELRCAEEETSFDRRWCIPGTSVVVTGTNFCAPNYGLDAESGGGKCNEPKQHFVVPIETFEKIAIWNAGNMAVQYRRVKCRRDGGIRYTITGSGIFISVLISNVGGIGDIVGVKVKGSRTGWLPLGRNWGQNWHVSALLQNQPLSFEVTSSDGITVTSYNVAPKDWSFGQTFEGKQFES* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0590 316 PANTHER EXPANSIN-A13 72 315 - -
Lan16g0590 316 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 103 222 IPR007112 -
Lan16g0590 316 SMART dpbb_1 120 212 IPR007112 -
Lan16g0590 316 SUPERFAMILY PHL pollen allergen 219 311 IPR036749 -
Lan16g0590 316 Gene3D - 224 314 IPR036749 -
Lan16g0590 316 PRINTS Expansin/Lol pI family signature 84 99 IPR007118 GO:0005576
Lan16g0590 316 PRINTS Expansin/Lol pI family signature 102 120 IPR007118 GO:0005576
Lan16g0590 316 PRINTS Expansin/Lol pI family signature 124 142 IPR007118 GO:0005576
Lan16g0590 316 PRINTS Expansin/Lol pI family signature 205 221 IPR007118 GO:0005576
Lan16g0590 316 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Lan16g0590 316 PRINTS Expansin/Lol pI family signature 297 311 IPR007118 GO:0005576
Lan16g0590 316 PANTHER EXPANSIN-A15 72 315 IPR002963 GO:0009664
Lan16g0590 316 Pfam Expansin C-terminal domain 223 300 IPR007117 -
Lan16g0590 316 PRINTS Expansin signature 115 129 IPR002963 GO:0009664
Lan16g0590 316 PRINTS Expansin signature 180 197 IPR002963 GO:0009664
Lan16g0590 316 PRINTS Expansin signature 197 210 IPR002963 GO:0009664
Lan16g0590 316 PRINTS Expansin signature 221 233 IPR002963 GO:0009664
Lan16g0590 316 PRINTS Expansin signature 233 254 IPR002963 GO:0009664
Lan16g0590 316 PRINTS Expansin signature 268 289 IPR002963 GO:0009664
Lan16g0590 316 PRINTS Expansin signature 297 313 IPR002963 GO:0009664
Lan16g0590 316 Pfam Lytic transglycolase 122 212 IPR009009 -
Lan16g0590 316 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 232 311 IPR007117 -
Lan16g0590 316 Gene3D - 70 218 IPR036908 -
Lan16g0590 316 SUPERFAMILY Barwin-like endoglucanases 84 240 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0590 Lan-Chr16 7073566 7075784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0590 84 316 Expansin Gene Family AT3G03220 69.528 1.88e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0590 - - adu:107481013 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0590 16 7073566 7075784 Lan11g0335 11 2425585 2428272 PCT
Lan11g0335 11 2425585 2428272 Lan16g0590 16 7073566 7075784 PCT