Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0551 ATGGGTTCAGACATTTACATGAATGCTTTGTGTGTGCACGATTGGAAGAAGGGTTGGCCTCTGCGATCTGGTGGATTTGCCCAACTATGCACCAAGTGCGGATTCATGGAGGAATGGAAGCATGGCATCCTTGATCCATTATCGGCTTATGAGATGTCAGTTTTTTGTGATAAATTTCATCGTCAAAAAACTGGATGGGTGGAGTGTAAATTTTGCAACAAGCCTATCCACTGTGGATGCGTAGTATCTCGATCTTTGTTTGAGTACCTTGATTTCGATGGCATAGGTTGTGTTAGCTGTGTAGCTTCCCAACTTCATATGATGAGGAATACTGAAAATCCTAACGGGTCTATTTCATCAACCAAAAATAATGCAAGTGATCAGCACCCTGCTCATATTGATGGCACACTGTTTGTGGATAGTGTTGATGATGGAAAACTTATGCAATTGTGCAGAATTGTTGAAGCTACTGAATCCAGCCATTGGAATAATCCTCAGAGAGATAGCACAATATCACGTAGTGGACAAAACAGCCAAGAAGTGAAGTGTTCATTGGGGGAGGGGGATACTAGATTTCCGAATGTGATTAAACCATCAGTTCAGTCACCAACATTTTCTAAATTAGAAAATAATAGATCAACATGGGAGATTAAAAACATACATGAATCAACTGCACAACCATCTTTGAATGGAAATCCATCAGGGAACAGCAATGTCCTGCCTTCTTCTGGAGAGTTCGTAGATGGAAGACTTGACGACAAAGCATCTCCTCTCTTTCATCAAGGGCAAAGATTTCGCCCTATATTGCGCAAACCATCGAAGACTGGGATATCCATGGATCTGGAAACAGATAAAGGAACACTTTCTCATGCACGAATTGCCCGACCACCTGCTGAGGGGAGGGGCAAGAGTCAGTTGCTTCCTCGATATTGGCCCAGGATCACTGATCAAGAGCTGGAGCGGTTGTCCGGAGATTTGAAGTCCACTGTAGTGCCTTTATTTGAGAAGGTACTGAGTGCCAGTGATGCCGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTTCCTCCTATTTCGAATGCTGATGGTCTTCCTTTGCCGGTCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCCGATTTTGGCCAAATAACAACAGTAGGATGTATGTGTTGGAGGGTGTGACCCCTTGCATACAGGCCATGCAATTATGTGCTGGTGATACTGTAATATTTAGTCGGATAGATCCTGGGGGAAAACTTGTTATGGGTTTCAGAAAGGCATCGAATTCTATAGATACACAGGATGCTTCTACATCTGCCCATTCTAATGGCATTTCAACAAAGGGAACAACCAATTCTGGTGGAACCGAGAATCTGCCATCGGGTAGCAGCTATGCTGATATTCTCCAGTCGATAAAAGGGAATGGGGAACCTCACTTAAATGGACATCCGGAACATCTTCGTTTGGGTGCTGGAGCTGCTGGTTTGCTTAATACAGAAAATTGCGAGAAAACAAACAATCATTCACCACAGCAACCAATCCCAGTTTCAGAGAAGAAGAGGACTCGTAATATTGGGCCTAAAAGCAAGAGGTTGCGCATTGATAACGAAGATGCTATGGAGTTGAGGCTTACATGGGAAGAAGCACATGATTTGCTTCGTCCGCCGTCAAGTGTCCAGCCAGTCATTGTCACAATTGAGGGCCAAGTAATTGAAGAATATGAGGAACCACCAGTTTTTGGAAAGAGGACTATACTCTGTGTCTGTTCATCTGGGGGAAAAGTACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGGAGGCTGCCAGTCGATGCTGTTCTTCCTCCCAAGTGGACATGTTTCGAAAATGTTTGGGATGCATGCAGGTCTTCATGTACCGTACCAGAGGAGGTGAGTTCAAGGGAATTAGCAAATCCTCTTATTCCCAACAAAGATTTTAAGAAGCGAAGAACTCTAGAAAATGGCAAGTCAATCAAAGAACATGAGCCTTCTGGATTAGATGCTCTTGCCAGTGCAGCAGTTCTAGGAGAAAATCTTATCGACCCTGCCGAGTTGTCAGCTGGAGCCACCACGAAACATCCTAGACATCGCCCCGGATGCACTTGTATTGTGTGCATTCAGCCACCTAGTGGAAAAGGGAAACATAAGCCAACCTGTACTTGCAATGTGTGCATGAGTGTGAAGCGTCGGTTCAAAACCATTAGGCTACGAAAGAAGAGACGCCAATCGGAACGCGAAGCAGATGCTGCTGCTAAAAAAGATCATAATCACGGGAGAGACAAGTCAGAACCCAATGGAACATCAAAATCAAAAGATAACACAATCCATTCGGAGAAAGAGGGAGGACTTAAAGGTCAGCCTGAGGTGGGCGTGTCAGGTGCTGGACAAGTATACTTGAATTATTATGCCAACCGTGCCGCTACGCAAATGGATATAGCAAGACTTAGCATGTCTATTAATGATCTTGAAATTACAAACCATCAGGTAAGTGAATATATGAATGAGAATGGCTTAAAAAGGTTCAATAGTGAAGTGCAAGCTAGTCAGCATTCTTCATTACTCACTCAATCTAATGGAGAAGGTAAGGAATACTTACCTGTTTTGAAGGGAGAACAAAGTCAAAACAATCTTTCTTGA 2682 0.4377 MGSDIYMNALCVHDWKKGWPLRSGGFAQLCTKCGFMEEWKHGILDPLSAYEMSVFCDKFHRQKTGWVECKFCNKPIHCGCVVSRSLFEYLDFDGIGCVSCVASQLHMMRNTENPNGSISSTKNNASDQHPAHIDGTLFVDSVDDGKLMQLCRIVEATESSHWNNPQRDSTISRSGQNSQEVKCSLGEGDTRFPNVIKPSVQSPTFSKLENNRSTWEIKNIHESTAQPSLNGNPSGNSNVLPSSGEFVDGRLDDKASPLFHQGQRFRPILRKPSKTGISMDLETDKGTLSHARIARPPAEGRGKSQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISNADGLPLPVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLCAGDTVIFSRIDPGGKLVMGFRKASNSIDTQDASTSAHSNGISTKGTTNSGGTENLPSGSSYADILQSIKGNGEPHLNGHPEHLRLGAGAAGLLNTENCEKTNNHSPQQPIPVSEKKRTRNIGPKSKRLRIDNEDAMELRLTWEEAHDLLRPPSSVQPVIVTIEGQVIEEYEEPPVFGKRTILCVCSSGGKVQWAQCDDCSKWRRLPVDAVLPPKWTCFENVWDACRSSCTVPEEVSSRELANPLIPNKDFKKRRTLENGKSIKEHEPSGLDALASAAVLGENLIDPAELSAGATTKHPRHRPGCTCIVCIQPPSGKGKHKPTCTCNVCMSVKRRFKTIRLRKKRRQSEREADAAAKKDHNHGRDKSEPNGTSKSKDNTIHSEKEGGLKGQPEVGVSGAGQVYLNYYANRAATQMDIARLSMSINDLEITNHQVSEYMNENGLKRFNSEVQASQHSSLLTQSNGEGKEYLPVLKGEQSQNNLS* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0551 893 MobiDBLite consensus disorder prediction 508 525 - -
Lan16g0551 893 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 864 - -
Lan16g0551 893 SUPERFAMILY DNA-binding pseudobarrel domain 332 436 IPR015300 -
Lan16g0551 893 MobiDBLite consensus disorder prediction 750 804 - -
Lan16g0551 893 MobiDBLite consensus disorder prediction 438 471 - -
Lan16g0551 893 ProSiteProfiles B3 DNA-binding domain profile. 334 435 IPR003340 GO:0003677
Lan16g0551 893 MobiDBLite consensus disorder prediction 222 243 - -
Lan16g0551 893 MobiDBLite consensus disorder prediction 161 193 - -
Lan16g0551 893 MobiDBLite consensus disorder prediction 755 798 - -
Lan16g0551 893 Pfam CW-type Zinc Finger 603 645 IPR011124 GO:0008270
Lan16g0551 893 MobiDBLite consensus disorder prediction 864 893 - -
Lan16g0551 893 CDD B3_DNA 332 433 IPR003340 GO:0003677
Lan16g0551 893 Gene3D - 602 655 - -
Lan16g0551 893 ProSiteProfiles Zinc finger CW-type profile. 598 648 IPR011124 GO:0008270
Lan16g0551 893 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 864 - -
Lan16g0551 893 MobiDBLite consensus disorder prediction 508 536 - -
Lan16g0551 893 Pfam B3 DNA binding domain 334 433 IPR003340 GO:0003677
Lan16g0551 893 SMART B3_2 334 435 IPR003340 GO:0003677
Lan16g0551 893 MobiDBLite consensus disorder prediction 161 184 - -
Lan16g0551 893 Gene3D - 312 439 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0551 Lan-Chr16 6496808 6504565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0551 1 768 B3 DNA Binding Superfamily AT2G30470 49.103 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan16g0551 B3 7.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0551 - - lang:109337935 1444.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0273 4 4423388 4431074 Lan16g0551 16 6496808 6504565 LSH
Lan16g0551 16 6496808 6504565 Lan11g0355 11 2558055 2564886 PCT
Lan16g0551 16 6496808 6504565 Lan9g1244 9 19719897 19726853 PCT
Lan11g0355 11 2558055 2564886 Lan16g0551 16 6496808 6504565 PCT
Lan9g1244 9 19719897 19726853 Lan16g0551 16 6496808 6504565 PCT