Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0547 ATGACTGGGAAGAAAGTGAAACTTGCATTCATACTCAATGATTCTGCAAGAAAAGCAACATACAATAGAAGAAAGAAGGGTCTATTGAAAAAGGTTAATGAACTTAGCACACTTTGTGGAATTGAAGCTTGTGCTATAGTTTATAGTCCTTATGAGCATCAACCTGAGGTTTGGCCATCCCCTTCAGGGGTTCAAAGGGTGTTTGCAAAGTTCAATAACATACCCGAATCGGAGAAAAGCAAGAAGATGGTGAATCAAGAAGCTTTCCTTAATCAAAGGATTCTGAAATCTGGGAAGCAAGCAAAGAATTTGAGGAGAGAAAATAGGAAGTTGGAGATAACTCTTCTCATGTTTCATTGTCTTAGTGTTGGTAATATTTTGCATAACAACATGAGCACTATTGATTTGAATGATCTTGCATGGTTAATTGACCAAAACTTGAAGGAAATTGATCGAAAGATTGAAACATTAGAAAATTAA 480 0.3583 MTGKKVKLAFILNDSARKATYNRRKKGLLKKVNELSTLCGIEACAIVYSPYEHQPEVWPSPSGVQRVFAKFNNIPESEKSKKMVNQEAFLNQRILKSGKQAKNLRRENRKLEITLLMFHCLSVGNILHNNMSTIDLNDLAWLIDQNLKEIDRKIETLEN* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0547 159 Coils Coil 143 159 - -
Lan16g0547 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lan16g0547 159 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lan16g0547 159 SUPERFAMILY SRF-like 4 95 IPR036879 GO:0003677|GO:0046983
Lan16g0547 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan16g0547 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan16g0547 159 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan16g0547 159 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan16g0547 159 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 158 - -
Lan16g0547 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan16g0547 159 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Lan16g0547 159 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0547 Lan-Chr16 6374221 6374866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0547 1 159 Type I MADS-box Gene Family AT5G48670 57.862 1.11e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan16g0547 SRF-TF 2.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0547 - - gmx:100813231 226.483