Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0545 ATGGATCCCGAAATTTCCCGTTGGGTTCTCGAATTCCTTCTCCGGAGTACCGTTTCCGATTCCCTCATCGCGAAAACCCTAACCGCTCTTCCTCTCTCCGGCGCCGATTCCCGCCTCAAGAAAACCATCCTCCTCCGCACCCTCCAATCCTTCCACTCCAATGCCTCAATCACCGAAACCTCTCTCGAAATCCTCGAACTCATAGAAGAGATTGACCTAAACGACGCCGTTCCGATAACGGATTCAATGCGCCGCGCCTTCTGTGCCGTTGCGGTCGAGTGCACTGTCAAGTACCTCGCTGCATGCCCCGATGATTCCGCGGGGAATTATTTAGCTGCCGTGAGGAGGATATGGCGGGGGAGGGTGGCGAAGCTGGAGAGTGCCGGTCGCCGGGGAGGGTTGTTCTCGGAGGAGTTGGTGCGGTGGAGGGATGAATTGGAAGCTGCGGTTTGGGATACTAGGGTTTGTGAGAGGCTGGTGGGGTTGAATAGTAGGACTGAGGCGCTGAATGAGGTGAATGTGTATTTGAAGGAAGCTTGGGAGATTTTGGGTCCTTCCTTTCTTGATTCTGTGGCGGCGATGGCGAAGGCGAAGGGTTTGCACTTTGATTTTGGTGGAGAATCGGTTGGGAACCGAAATGGAGGGTTAGAGGTTTCGGCTAATGTTGATGGTAATGATGATGATGCTAACAATCATGATAATGGTAATGATAATGATGATGCCAACAATCATGATAATGATGGTGATGCTAGCAATCATGATAATGATGGTGATGCTAGCAGTCATGATAATGATGGTTATGATGGTGGTGCATGCCACAAGGAGGATAAAAATCTGGACAAGGAAGATGACTCGGAAGAGAGAGTTGGGGCTTTTGTTGATTTAAACCATGATTTGGCTGCAGAGAGAGACACAGAAATTCAGAAAGGCAATCTTCAACATAAACGTAAGCACCTTGCACACACATGCCCTGACAGTATTGGTGAATTTGCTTATGGTGGTGAGCTGAAGAGGAAGCGTGATGAAGGGTTAAAAGGTTTTACAAAGCAGAGGAGGGACTTTGATGGTGGTGATCGGAGTGAACCAGATGATGGTGGTGTATGCTGCACGGAAGATGTGTCAGTATCTGGTGAGAAGCAACAGCAGGAACAGGTGGAAGAGAGAGTTGAGACTTCTGTTGACGGGAATCAGGAATTGGGTGGATGTGACTTGCCTGCACAGGGAGAGAAAGAAATTCAGAAACACAATCTTAAGCATAGAGTCAAGCACACTGCACTTCGTAGATGCTGTAAGGGAGTTAAACTGTCTGGTACTGAGGAAGTGGAACCAGCAAAATCATGGGGGAAATGTGATTATGTGCCTAGTTCTGAAGTTAAAAAAGTTCGTGAATCTCTTAAATCAAGTTCTTTGGAGCTGCAAGCATTGGTTAAGGATCCTCTTCCTGATGCATTGCAAACATCTGAAGTTGTAAGATCCAAATTGGCAGTGAAAGACATAAACCAGAATGGAGATGTAGATGTACCAGATCCAATTGTCTGCAAGAGTATTGTACCTTTTCAACCAAATGATGCTAATCTTGTAAAGCAGTCTTTTGTTCGTTGTAGTAATAATGTTCGTCGCCCCAACTTATTGGAACGGAAAGATACAGCTCGTACTTATCAGTGGGATGATTCCTTAGGTAACTTTTCACAAGTTGCACAGCCAAGAAAGAAGAAAAGAAGATGGACGTCATTGGAAGAGGAGACACTAAGGGATGGCGTAAAAATGTTTGGAGAAGGAAGCTGGGCAGCAATCCGAAGTTTTTATAGTAACATACTTGAAAACAGAAGTGGAGTTGATCTGAAGGACAAGTGGAGAAACATGACCCGGTGA 1872 0.4631 MDPEISRWVLEFLLRSTVSDSLIAKTLTALPLSGADSRLKKTILLRTLQSFHSNASITETSLEILELIEEIDLNDAVPITDSMRRAFCAVAVECTVKYLAACPDDSAGNYLAAVRRIWRGRVAKLESAGRRGGLFSEELVRWRDELEAAVWDTRVCERLVGLNSRTEALNEVNVYLKEAWEILGPSFLDSVAAMAKAKGLHFDFGGESVGNRNGGLEVSANVDGNDDDANNHDNGNDNDDANNHDNDGDASNHDNDGDASSHDNDGYDGGACHKEDKNLDKEDDSEERVGAFVDLNHDLAAERDTEIQKGNLQHKRKHLAHTCPDSIGEFAYGGELKRKRDEGLKGFTKQRRDFDGGDRSEPDDGGVCCTEDVSVSGEKQQQEQVEERVETSVDGNQELGGCDLPAQGEKEIQKHNLKHRVKHTALRRCCKGVKLSGTEEVEPAKSWGKCDYVPSSEVKKVRESLKSSSLELQALVKDPLPDALQTSEVVRSKLAVKDINQNGDVDVPDPIVCKSIVPFQPNDANLVKQSFVRCSNNVRRPNLLERKDTARTYQWDDSLGNFSQVAQPRKKKRRWTSLEEETLRDGVKMFGEGSWAAIRSFYSNILENRSGVDLKDKWRNMTR* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0545 623 SUPERFAMILY Homeodomain-like 568 622 IPR009057 -
Lan16g0545 623 SMART sant 571 623 IPR001005 -
Lan16g0545 623 PANTHER MYB TRANSCRIPTION FACTOR 1 623 - -
Lan16g0545 623 MobiDBLite consensus disorder prediction 343 384 - -
Lan16g0545 623 Gene3D - 564 623 - -
Lan16g0545 623 MobiDBLite consensus disorder prediction 226 286 - -
Lan16g0545 623 CDD SANT_TRF 573 623 - -
Lan16g0545 623 Pfam Myb-like DNA-binding domain 572 621 IPR001005 -
Lan16g0545 623 PANTHER MYB TRANSCRIPTION FACTOR 1 623 - -
Lan16g0545 623 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 567 623 IPR017930 -
Lan16g0545 623 ProSiteProfiles Myb-like domain profile. 567 622 IPR001005 -
Lan16g0545 623 MobiDBLite consensus disorder prediction 213 286 - -
Lan16g0545 623 MobiDBLite consensus disorder prediction 343 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0545 Lan-Chr16 6336944 6340717 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0545 575 621 Single Myb Histone (SMH) Gene Family AT1G15720 53.191 2.89e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan16g0545 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0545 - - lang:109329694 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0276 4 4529874 4533614 Lan16g0545 16 6336944 6340717 LSH