Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0542 ATGGCACACCAGGAATTTTCCATTGCTCTTATGATCCTCATTGTTCTCCTTATGAACATGAACATGCAAGGAGCTATGGCTGACTATGGTGGCTGGCAGGGTGCTCATGCCACTTTCTATGGTGGGGGTGATGCCACTGGCACAATGGGAGGAGCATGTGGGTATGGAAATTTGTACAGCCAAGGTTATGGAACTAACACTGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCCTAAGCTGTGGGTCTTGTTATGAAATGAGATGTGATGATGACCCAAGATGGTGCAAGCCTGGCTCTATCATTGTTACTGCTACAAACTTTTGTCCTCCAAACCCATCTTTGCCTAACAACAATGGTGGTTGGTGCAACCCTCCTCTGCAGCACTTTGATATGGCTGAACCAGCTTTCCTTCAAATTGCACAATATAAGGCTGGAATTGTGCCTATTTCTTTTAGAAGAGTCCCTTGTATGAAAAAGGGTGGAATAAGGTTCACAATCAATGGCCACTCTTACTTCAACCTAGTTTTGGTGACCAATGTTGGTGGTGCTGGTGATGTTCATTCAGTGTCCATAAAAGGCTCTAGAACAGGGTGGCAACCCATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACTCTTACCTCAATGGACAAAGCCTCTCTTTTCAAGTCACAACCAGTGATGGTAGAACTGTTACAAGCTTTAATGTTGCACCAGTTAATTGGCAATTTGGTCAGACATTTCAGGGGTCTCAATTTTAA 765 0.4431 MAHQEFSIALMILIVLLMNMNMQGAMADYGGWQGAHATFYGGGDATGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDDDPRWCKPGSIIVTATNFCPPNPSLPNNNGGWCNPPLQHFDMAEPAFLQIAQYKAGIVPISFRRVPCMKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTSFNVAPVNWQFGQTFQGSQF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0542 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Lan16g0542 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Lan16g0542 254 Gene3D - 17 158 IPR036908 -
Lan16g0542 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Lan16g0542 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Lan16g0542 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Lan16g0542 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Lan16g0542 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Lan16g0542 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Lan16g0542 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Lan16g0542 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Lan16g0542 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Lan16g0542 254 Gene3D - 161 254 IPR036749 -
Lan16g0542 254 Pfam Lytic transglycolase 67 151 IPR009009 -
Lan16g0542 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Lan16g0542 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Lan16g0542 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Lan16g0542 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Lan16g0542 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Lan16g0542 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Lan16g0542 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Lan16g0542 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Lan16g0542 254 SMART dpbb_1 67 152 IPR007112 -
Lan16g0542 254 PANTHER EXPANSIN 4 254 - -
Lan16g0542 254 PANTHER EXPANSIN-A15 4 254 IPR002963 GO:0009664
Lan16g0542 254 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0542 Lan-Chr16 6300712 6303347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0542 2 254 Expansin Gene Family AT2G40610 77.953 1.54e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0542 - K20628 gmx:100777044 479.944