Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0541 ATGTCTTCCAATAAAAAGTGCAAGGATGATGGCAAAACTGAGCATCTTTACATTGAAACTGACCCTACTGGACGCTATGGCAGGGTTGGAGATATTCTTGGAAAAGGGGCAATGAAAACAGTGTACAAAGCAATTGATGAGGTCCTTGGAATAGAGGTAGCATGGAATCAAGTCAGACTCAATGAAGCACTTCGTACACCGGACGACTTGGAGCGGCTATACTTAGAAGTTCATCTCCTCAGTACCCTCAAGCACCAATCCATCATGCAATTCTATACCTCTTGGATTGATGTTGACAAAAAGACCTTCAACTTTATCACAGAGATGTTCACTTCTGGGACACTCAGAGAATACAGGAAGAAATATAAGCAAGTAGGCATACAAGCAATAACGCGTTGGGCTCGCCAAATCTTACAGGGACTTGTTTATCTACATGAACATGACCCCCCAGTAATTCATAGGGACCTCAAATGTGATAACATATTTGTCAATGGCCATCTTGGACAAGTAAAAATTGGTGACTTGGGTCTTGCCGCAATTCTCCGCGGTTCCCAGCCAGCTCACAGTGTCATAGGAACCCCCGAGTTCATGGCACCAGAATTGTACGAGGAAGAATACAATGAACTTGTCGATGTGTACTCATTTGGCATGTGTGTTTTGGAAATGCTTACATCTGACTATCCATATAGTGAATGTTCTAACCCTGCACAGATATACAAGAAAGTGACATCGGGGAAATTACCAGCAGCCTTTTACCGGATTGAAGACACGGACGCAAAGAAGTTTATCGGCAAATGCCTAGTAACTGCAGCAAAGAGACCATCGGCGAAAGAATTGTTGCATGATCCCTTTCTTGCGTCCAGTGATGCGTCAACCATGACAAAGATCGGAATTCAGGAGCCATTTTTGAATTACAATGAGATGGATAAACTTCAATTGAGTGAGGATTTACCTAGGACTGAAATGTCAATAACTGGGAAGCTCAATCCTGAAGATGATACTATCTTTCTCAAAGTGAAAATTGTTGATAAGGATGGTTCAAGTAGGAATGTATTTTTTCCATTTGATATTTTCTCTGACACCCCAATTGATGTTGCAAAGGAGATGGTGAAAGAATTGGAGATCACAGATTTGCAGCCTTATGAAATAGCAACTATGATTGAAGGAGAATTATCTTTGCTGCTCCCAAATAAGAGGAAAAGTAGTTGTCCAGACAGCTCTCATACATTCAATTATCAAGATGACGATGATGATGATGGTGATGATAATGACGGACTTCATCAAGATTTCCACTACGTTTCTTCCTGTTCGTCACCCAAAGAATCAATATCAGGTTTAGTCAGTAAAGAAGATGAAATTTCAAATGGATATTATTGGATCCAAGATGACATGCATGATGATGCAAGTTCAAGATGCTCTTCACAAGGGACATATTCCAACTTCAATTATTACAATGTAGATGACCATGAGAACAATGTAGCATCTACAAGAAAAGATAAACATCCCATCACAAAGAGTCACAGGTGTACAAGGTTTCCTCATGGAGAAGATTCAATCACTTCCAAGCAAGGCAAAGTGTTAGCCGGACCGCAAGCACTTTCTACTAGTCAAAGTAAGAGGATGATAGACACTTGTAGCAGGCTAACAAGGAACAATTCACTAATTGATATGCGGAGCCAATTACTGCATCGATCGCTAGTTGAAGAAGTAAACAAAAGACGGTTGTTCAATACAGTTGGAGCTGTGGAAAATATTGGATTTCAGACACCTTGTGATGTTTCCATAAAAAAGAACTAG 1797 0.4046 MSSNKKCKDDGKTEHLYIETDPTGRYGRVGDILGKGAMKTVYKAIDEVLGIEVAWNQVRLNEALRTPDDLERLYLEVHLLSTLKHQSIMQFYTSWIDVDKKTFNFITEMFTSGTLREYRKKYKQVGIQAITRWARQILQGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECSNPAQIYKKVTSGKLPAAFYRIEDTDAKKFIGKCLVTAAKRPSAKELLHDPFLASSDASTMTKIGIQEPFLNYNEMDKLQLSEDLPRTEMSITGKLNPEDDTIFLKVKIVDKDGSSRNVFFPFDIFSDTPIDVAKEMVKELEITDLQPYEIATMIEGELSLLLPNKRKSSCPDSSHTFNYQDDDDDDGDDNDGLHQDFHYVSSCSSPKESISGLVSKEDEISNGYYWIQDDMHDDASSRCSSQGTYSNFNYYNVDDHENNVASTRKDKHPITKSHRCTRFPHGEDSITSKQGKVLAGPQALSTSQSKRMIDTCSRLTRNNSLIDMRSQLLHRSLVEEVNKRRLFNTVGAVENIGFQTPCDVSIKKN* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0541 598 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 23 597 - -
Lan16g0541 598 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Lan16g0541 598 Gene3D Transferase(Phosphotransferase) domain 1 110 293 - -
Lan16g0541 598 SUPERFAMILY Protein kinase-like (PK-like) 28 320 IPR011009 -
Lan16g0541 598 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0541 598 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0541 598 CDD STKc_WNK 25 285 - -
Lan16g0541 598 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0541 598 MobiDBLite consensus disorder prediction 398 430 - -
Lan16g0541 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Lan16g0541 598 PANTHER WNK KINASE 23 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0541 Lan-Chr16 6292048 6296853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0541 17 596 MAP Kinase Kinase Kinase AT5G58350 58.020 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lan16g0541 Pkinase 9.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0541 K08867 - gmx:100778102 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1047 2 21715928 21720487 Lan16g0541 16 6292048 6296853 LSH
Lan16g0541 16 6292048 6296853 Lan2g1047 2 21715928 21720487 PCT
Lan16g0541 16 6292048 6296853 Lan11g0357 11 2582043 2586270 PCT
Lan2g1047 2 21715928 21720487 Lan16g0541 16 6292048 6296853 PCT
Lan11g0357 11 2582043 2586270 Lan16g0541 16 6292048 6296853 PCT