Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0536 ATGCCGGAGATCGAACACGCCGCCGCTGCAGCGTCGTCTGAGGAGGAAACCGCGTTGTTCGGGAAATACGAACTGGGCCGTCTCCTCGGATGCGGCGCGTTCGCGAAGGTGTACTACGCGCGGAACGTGAAAACGGGTCAAAGCGTGGCGGTGAAAATAATCAACAAGAAGAAACTCGCCGGAACAAGCCTCGCCGGAAACGTGAAACGCGAGATCTCGATCATGAGCAAGCTCCACCACCCTCATATCGTACGTCTCTACGAGGTTCTCGCCACAAAGACCAAGATCTTCTTCGTAATCGAGCTCGTTCGCGGTGGCGAACTTTTCGCAAAAATTTCAAAGGGTCGTTTTTCGGAGGATCTCAGCCGTCGATATTTTCATCAGTTAATCTCAGCCATCGGTTACTGCCACTCACGTGGCGTGTTCCATCGTGATTTGAAACCAGAGAATCTCTTAATCGATGAAAATGGAAGTTTAAAAGTTTCGGATTTCGGATTAAGTGCGGTTCGGGAACAGATCCGACCCGATGGGTTGCTCCATACCCTTTGTGGAACACCCGCTTACGTGGCACCTGAGATTTTAGCAAAACGAGGTTATGATGGTGCTAAAGTTGATGTTTGGTCCTGCGGCGTCGTTTTGTTCGTTCTTGCAGCTGGTTATTTACCGTTTAATGACCCCAATTTGATGGTTATGTATAGGAAGATTTATAAAGGCGAGTTTCGTTGTCCACGTTGGATGTCTCAGGAGCTTCGACGATTTCTGTCAAAGCTCCTGGATACTAACCCAGAGACCCGGATCACCGTTGACGCGATGACCCGGGACCCATGGTTTAAAAAGGGGTATAAAGAAATTAAATTTCATGAAGAGGATTATGGTGGAGGGTTCGGGTCAAAAGGTGTTAGGTCAGAGAAGGTGGTGGATTTGAATGCGTTTGATATCATATCATTTTCGTCGGGTTTGGATTTGTCTGGGTTGTTTCAGCAGATGGATGGTGGTGAAAGGGTGGTGTTGCAGGGGTCGCCGGAGAAGGTGGTGGAGTTAGTGGAGGAGGTGGCGGTTGCGGCGGGATTGGCGGTGAGGTGGAAGAAGGAATGTGGGGTTGAGCTTGAAGGGGCTAATGTGAATTTTGGAATTGGGGTTGAGGTTTACCGGTTAACGGCGGAGATGGTGGTGATTGAGGTAAACCGGAGAGGCTGTGACGTGGTGGCGTTTAGGGATGTGTGGGAAAATAAGCTTAAGCCTAAGCTGTTATGCTCTTCCAGTATTGCTACGACGTCGCATCATGAGTTACCTGAGTTGCAGGTTGCCGGTGACTAA 1317 0.4966 MPEIEHAAAAASSEEETALFGKYELGRLLGCGAFAKVYYARNVKTGQSVAVKIINKKKLAGTSLAGNVKREISIMSKLHHPHIVRLYEVLATKTKIFFVIELVRGGELFAKISKGRFSEDLSRRYFHQLISAIGYCHSRGVFHRDLKPENLLIDENGSLKVSDFGLSAVREQIRPDGLLHTLCGTPAYVAPEILAKRGYDGAKVDVWSCGVVLFVLAAGYLPFNDPNLMVMYRKIYKGEFRCPRWMSQELRRFLSKLLDTNPETRITVDAMTRDPWFKKGYKEIKFHEEDYGGGFGSKGVRSEKVVDLNAFDIISFSSGLDLSGLFQQMDGGERVVLQGSPEKVVELVEEVAVAAGLAVRWKKECGVELEGANVNFGIGVEVYRLTAEMVVIEVNRRGCDVVAFRDVWENKLKPKLLCSSSIATTSHHELPELQVAGD* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0536 438 Pfam Protein kinase domain 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0536 438 CDD CIPK_C 309 416 - -
Lan16g0536 438 Gene3D Transferase(Phosphotransferase) domain 1 13 300 - -
Lan16g0536 438 SMART serkin_6 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0536 438 Pfam NAF domain 308 360 IPR004041 GO:0007165
Lan16g0536 438 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 423 - -
Lan16g0536 438 SUPERFAMILY Protein kinase-like (PK-like) 20 285 IPR011009 -
Lan16g0536 438 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Lan16g0536 438 PANTHER - 1 423 - -
Lan16g0536 438 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Lan16g0536 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Lan16g0536 438 ProSiteProfiles Protein kinase domain profile. 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0536 438 Gene3D Kinase associated domain 1, KA1 304 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0536 Lan-Chr16 6242135 6243950 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0536 1 426 CBL-interacting serine-threonine protein kinases AT2G30360 62.870 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lan16g0536 Pkinase 4.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0536 - K12761 gmx:100799169 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0294 4 4961190 4963038 Lan16g0536 16 6242135 6243950 LSH
Lan16g0536 16 6242135 6243950 Lan11g0359 11 2599873 2601440 PCT
Lan11g0359 11 2599873 2601440 Lan16g0536 16 6242135 6243950 PCT