Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0534 ATGGAGAGTAAATCAAAAATCATATTGCAAAGATATGAGTTGGGTAGATTACTAGGCCAGGGTACCTTTGGAAAGGTCTACTATGCTAGGAGTTCAATAACTAACCAGAGTGTGGCTATCAAAATGATTGACAAAGAAAAGGTCATGAGAACTGGGCAAGCTGATCAAATCAAGCGTGAAATATCTGTGATGAGCCGGGCTAAACATCCCAATATTATACAACTTTTCGAGGTTATGGCCACTAGGACTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGTGAACTCTTCAACAAGGTGGCCAAAGGAAAACTCAATGAAGATGTTGCACACAAGTATTTTAAGCAGCTAGTCAATGCAGTTGATTTTTGTCACAGTAGAGGCGTTTACCACCGAGATATAAAGCCAGAGAACATTTTGTTGGATGAAAATGGGAATTTGAAGGTCTCGGATTTCGGTTTAAGTGCTCTTACTGACTCAAAGCGACAGGACGGCTTACTCCATACACCTTGTGGCACCCCGGCCTATGTTGCTCCAGAAATCATCAAAAGGAAGGGATATGATGGTGCCAAGGCTGATATTTGGTCTTGTGGAATAGTCCTATTTGTGTTATTGGCAGGTTATCTCCCTTTCCGAGACTCAAATTTGATAGAGATGTATAGGAAGATAAGCAAAGCGGAATTTAAGTGTCCTAATTGGTTCCCACCCGAAGTATGCAGGTTATTGTCCAAGATATTGGATCCAAATCCAGAGACTAGGATTTCCATAGCCAGAGTTAAGGAATCTTCGTGGTTTAAGAAAGGACCGAATGCTGGGCGCAAAAAACATGAAGCGGAAAACAACAATGCCTCTTCTTCGTGGACAAATATTTCTTATCAAAGTGAGGAAAGTGATAATGTTCCTACAGCAGAAACAAAGGAAGAGTCAGTTATGCCTATAAGTATAAATGCCTTTGATATCATCTCCCTTTCTTCTAGTTTCGACCTTTCTAAATTCTTCGGTGACGGTTTTAGGAAAAGAGCAGCAAGATTCACTTCAAGACAACCTGCATCAGCCATCATCTCAAAGCTGGAAGAAATTGCGAATCGACTTAGACTAAAGATAAGTAAAAAAGCTGGTGGTTTATTGAAATTAGAAGGACTAGATGAAGGTAGGAAAGGGGTTTTATCCATTGATGCAGAGATCTTTGAGCTTACCCCTTTATTCCATTTGGTAGAGGTGAAAAAATCAAATGGTGATACATTGGAATATCAGAAAATATTGAATGAGGATATAAGGCCTTCTCTTCAGGATATTGTTTGGGTCTGGCAAACTGACCAACAACAGCAATCTCAACAATCAGAACAACAGCAATAG 1359 0.3974 MESKSKIILQRYELGRLLGQGTFGKVYYARSSITNQSVAIKMIDKEKVMRTGQADQIKREISVMSRAKHPNIIQLFEVMATRTKIYFVMEYAKGGELFNKVAKGKLNEDVAHKYFKQLVNAVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALTDSKRQDGLLHTPCGTPAYVAPEIIKRKGYDGAKADIWSCGIVLFVLLAGYLPFRDSNLIEMYRKISKAEFKCPNWFPPEVCRLLSKILDPNPETRISIARVKESSWFKKGPNAGRKKHEAENNNASSSWTNISYQSEESDNVPTAETKEESVMPISINAFDIISLSSSFDLSKFFGDGFRKRAARFTSRQPASAIISKLEEIANRLRLKISKKAGGLLKLEGLDEGRKGVLSIDAEIFELTPLFHLVEVKKSNGDTLEYQKILNEDIRPSLQDIVWVWQTDQQQQSQQSEQQQ* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0534 452 Gene3D Kinase associated domain 1, KA1 315 436 - -
Lan16g0534 452 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 450 - -
Lan16g0534 452 CDD CIPK_C 317 431 - -
Lan16g0534 452 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Lan16g0534 452 Gene3D Transferase(Phosphotransferase) domain 1 99 314 - -
Lan16g0534 452 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Lan16g0534 452 PANTHER - 2 450 - -
Lan16g0534 452 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0534 452 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0534 452 Pfam NAF domain 313 371 IPR004041 GO:0007165
Lan16g0534 452 Gene3D Phosphorylase Kinase; domain 1 5 98 - -
Lan16g0534 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lan16g0534 452 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0534 452 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0534 Lan-Chr16 6222990 6225867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0534 1 443 CBL-interacting serine-threonine protein kinases AT5G58380 67.177 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lan16g0534 Pkinase 8.4e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0534 - - gmx:100790905 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0295 4 4968641 4970706 Lan16g0534 16 6222990 6225867 LSH
Lan2g1043 2 21626613 21629373 Lan16g0534 16 6222990 6225867 LSH
Lan16g0534 16 6222990 6225867 Lan2g1043 2 21626613 21629373 PCT
Lan2g1043 2 21626613 21629373 Lan16g0534 16 6222990 6225867 PCT