Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0533 ATGGAGATATCATTGTTAAAGGTGCATGTTGATGACATATCCTCATTTTTGCATTTATTGTTTTCTGGAAATAAGAACTCAGAACTTGTCACAAAGTATTACCAGAAGGCTAAGGAGATACTTAAGTTGTTGAAGCCAATCTTTGATGTGATTGTTAATTCTGAGTTAGCTTCTGATGAAGTGCTTTGTAAGTTATTTGAGGATCTTGGTCATACTGTTGATGAATTAAGGGAGCACATTGAGAACTGGCACCTATTATCTAGCAAAGTTTACTTTGTTAAGCAAGCTGAACCCTTGATATCTAGGATTCGGACTTCAGGGCTCAGTATTTTCCAGCAGCTGAAGGCTTTCCATCATTGCCTCCCTGATGGGTTGAGTTCTGAACATGTAGAGCACTGTCTTCAGAAACTTCAGCATTTGGGACACAATGAAACCTCATCAGTCATTGAGGAAGCTATTACGGAACAACAGGATGGTGTAGGGCCGAGTTCAGAGGTAATGACAAAAATTGCTAATAGCCTGGGCTTAAGTTCTAATGAAGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAAGTTGAAGGAGAATGCTGAACAAACCGAAAATACTGCAGAAGCTGAATACATTGATCAAATAGTTGCTGTTGTTACATGTATGCATGAACGTCTTGTTATGCTTAAGCAAGCCCAGAGTTGCAGCCCGGTTCCGGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACTGATCCAGTGATTGTGGCATCAGGGCAAACCTATGAGCGGGCTTTCATCAAGAACTGGATTGATGCTGGCCTTACTGTTTGTCCAAAGACACGCCAGACTCTGTCTCACACCAACCTAATACCTAACTACACCGTAAAGGCACTAATCGCAAACTGGTGTGAATCAAACAATGTGAAGCTGGTTGATCCCCCCAAGTCCAAAAATTTAAATCAAGCATCTGTTCTTCATGGGTATATGGAGTCTGGTACAACCAGGGAATCACCTGTTTTTGCTCATTCAAGGAGCAACCAGTCATCCCCACCTGAGTCGGCTCCTTCTCGTTCTTGTAGTTCACCAGGGAATAACTTAACTTCTGGTGGAATCCAGCGAGAGGGAACATCACCAATGCATCCCCGTTTAACTTCAGAAGGTTCCTTAAGTGGCATGGTTAATGAGCAATATATGGATCTTGCAAGAATGTCACCCACAGGTTTAGATGACAGGTCTGCTAGCTCAGATGAAAGCAATGTAGATTCAGCTGGCCAACCATCAATATCGCCATCTAGAAGGGAATCTTCCAGTGCCTTTAGCTCTGAACAATCTCAAACCCATGTCAGAACCGTTTCTGATTCCTGTGCACTTTCTAGTGCAAAATTTCCTCAAGAAACACAGGGTGATGACAACAGTGCTCCTCAACTTTCAACCAGTCCAAGCTACAGCAGAGCTGCTTCTGGTGAATTGAATCCTGGGCTAGATGCTGCTGGTGCTGCTGCCATGCCATCACCACATCGAGAACCTGAGTTCCCACCCCGTTTCGTGGAAACAAGGTCTCGAAGCCAAGCTATGTGGCGGCGACCATCCGAGAGGCTTGGTTCTAGGATAGTATCTTCTCCTGCTATTGAAACAAGAGCTGATCTGTCTGCTATTGAAAACAAGATTCGGACTATCGTCGAGGGTTTGAGGAGCTCTGATCTTGATACTCAGAGAGGGGCAACGGCTGAACTTCGTCTTCTTGCAAAGCACAATATGGATAATCGAATTGCAATTGCAAACTGTGGAGCCATTAGCTTATTAGTTGACTTACTTCGGTCGACTGATACTAGGATCCAGGAAAATGCTGTTACAGCACTTCTCAACTTATCTATCAACGATAACAACAAAGCTGCAATCGCGACTGCTGGTGCAATAGAACCTTTAATTCATGTGCTTGAAACAGGGAGCGCAGAGGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGTTTATCAGTGATTGAGGAAAACAAGATCACCATAGGGAGGTCTGGGGCAATTAGACCACTGGTTGATTTACTAGGGAATGGAACCCCTAGGGGGAAGAAAGATGCTGCAACTGCTTTGTTTAATTTATCAATATTCCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAAACACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTGGATAAGGCTGTGGCTGTCCTAGCAAATCTTGCTACAATTCCTGAAGGAAGGAACGCAATTGGTCAAGAATGTGGGATTCCTGTTCTCGTTGAGGTTGTCGAATTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCAGCAGCTCTTCTACATCTTTGCTTACACAGTAACAGATTTTTAAGCATGGTGCTGCAAGAAGGAGCTGTCCCACCATTAGTAGCTTTATCACAGTCAGGAACCCCAAGGGCCAAAGAAAAAGCTCAGGCTCTTCTCAATCAATTTAGAAGTCAAAGACATGGTAATGCTGGGAGAAACTGA 2520 0.4417 MEISLLKVHVDDISSFLHLLFSGNKNSELVTKYYQKAKEILKLLKPIFDVIVNSELASDEVLCKLFEDLGHTVDELREHIENWHLLSSKVYFVKQAEPLISRIRTSGLSIFQQLKAFHHCLPDGLSSEHVEHCLQKLQHLGHNETSSVIEEAITEQQDGVGPSSEVMTKIANSLGLSSNEEVLIEAVALEKLKENAEQTENTAEAEYIDQIVAVVTCMHERLVMLKQAQSCSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDAGLTVCPKTRQTLSHTNLIPNYTVKALIANWCESNNVKLVDPPKSKNLNQASVLHGYMESGTTRESPVFAHSRSNQSSPPESAPSRSCSSPGNNLTSGGIQREGTSPMHPRLTSEGSLSGMVNEQYMDLARMSPTGLDDRSASSDESNVDSAGQPSISPSRRESSSAFSSEQSQTHVRTVSDSCALSSAKFPQETQGDDNSAPQLSTSPSYSRAASGELNPGLDAAGAAAMPSPHREPEFPPRFVETRSRSQAMWRRPSERLGSRIVSSPAIETRADLSAIENKIRTIVEGLRSSDLDTQRGATAELRLLAKHNMDNRIAIANCGAISLLVDLLRSTDTRIQENAVTALLNLSINDNNKAAIATAGAIEPLIHVLETGSAEAKENSAATLFSLSVIEENKITIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGQECGIPVLVEVVELGSARGKENAAAALLHLCLHSNRFLSMVLQEGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRN* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0533 839 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Lan16g0533 839 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 835 - -
Lan16g0533 839 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Lan16g0533 839 SUPERFAMILY RING/U-box 228 313 - -
Lan16g0533 839 SUPERFAMILY ARM repeat 556 828 IPR016024 -
Lan16g0533 839 Gene3D - 535 835 IPR011989 -
Lan16g0533 839 PANTHER U BOX DOMAIN-CONTAINING 8 835 - -
Lan16g0533 839 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Lan16g0533 839 Coils Coil 179 209 - -
Lan16g0533 839 MobiDBLite consensus disorder prediction 405 530 - -
Lan16g0533 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 596 638 IPR000225 GO:0005515
Lan16g0533 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 678 720 IPR000225 GO:0005515
Lan16g0533 839 CDD RING-Ubox_PUB 240 282 IPR045210 -
Lan16g0533 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Lan16g0533 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 719 760 IPR000225 GO:0005515
Lan16g0533 839 SMART arm_5 708 747 IPR000225 GO:0005515
Lan16g0533 839 SMART arm_5 585 625 IPR000225 GO:0005515
Lan16g0533 839 SMART arm_5 667 707 IPR000225 GO:0005515
Lan16g0533 839 SMART arm_5 626 666 IPR000225 GO:0005515
Lan16g0533 839 SMART arm_5 748 788 IPR000225 GO:0005515
Lan16g0533 839 Pfam Armadillo/beta-catenin-like repeat 587 624 IPR000225 GO:0005515
Lan16g0533 839 Pfam Armadillo/beta-catenin-like repeat 669 706 IPR000225 GO:0005515
Lan16g0533 839 Pfam Armadillo/beta-catenin-like repeat 626 665 IPR000225 GO:0005515
Lan16g0533 839 MobiDBLite consensus disorder prediction 336 389 - -
Lan16g0533 839 MobiDBLite consensus disorder prediction 408 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0533 Lan-Chr16 6197740 6208889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0533 196 838 U-box Gene Family AT2G23140 63.101 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0533 - - gmx:100811250 1306.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0533 16 6197740 6208889 Lan11g0362 11 2629205 2633644 PCT
Lan16g0533 16 6197740 6208889 Lan9g1237 9 19663118 19668088 PCT
Lan11g0362 11 2629205 2633644 Lan16g0533 16 6197740 6208889 PCT
Lan9g1237 9 19663118 19668088 Lan16g0533 16 6197740 6208889 PCT