Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0520 ATGGTAAAGTCTCCATGTTGTGAAAAAATAAGTGTCAAAAGGGATGTATGCAGTATAGAAGAAGATGCAAAGATACACTCACTTGTCTCAAAGAGTGGATCTGGTAACTTGACTTTTGTCTCCAAGAAAGCAGGGCTTAAGAGGTGTGGAAAGAGTTGCAGACTTAGGTGGAATAACTATCTCAGGCCAGATCTTAAGCATGATAACTTCACCTCTCAAGAAGAAGATTTAATCATTAAGCTTCATGCAGCCATAGGTAGCAGGTGGTCTATAATAGCCCAACAACTACATGGGAGAACAGACAATGATGTGAAGAATCATTGGAACACCAAGCTCAAAAAGAAGCTCTCTCAAATGGGGATAGACCCTGTTACTCATAAGCCCTTCTCTAAACTCATTGCTGACTATGGAAAAATTGGTGGTAGTGAGAAACATAGTACTCAAATTGGGTCAGACTTGAAGAATGCAATTCAGTTAAAATCAGAACCATATCAACTGTCACAAGAATTCAGAAATATTGATAGCCAGCCAAATCAATCACCAACATCTCCACTCAAATTTGAACCAATTGAGAACAACTTTTTATTTAACATAACTCATGGTGATAATCACCCAACGGATCTTTCCATGCCAAAAGTGTCAGGTGCATCAAATTGCATAAACTTGGAGAATGAGAGCATCCAAGCATCATCATCATCCACATCTTCTAGTTATTCCACTGCAGCACAAGAAGCCTTACCTGTAATACCCTTTAGTTGGAATGATTTTCTTCTGGAAGATGCTTTTGAACCAAATTTTGATGGCCAAGAACAAGCAACCATGGATGGGTTATCATTTTCAAAGGAGTTGGTGTGCCAAATAGAAAATGGGACAAGTCAAAGTTGGAATATTAAAGAGGTTAGGTCAAAACAAGCTACAAGCAATGACTTCCAAGTTTCATCATCCACTGACATTTCTTTTGTAGAAGCTATGCTTGGTCAAGAAAATGAGACCTTTCTAAGTTTCCCTAATCTTATGGAGGAACCATTCAACTACTAA 1038 0.3834 MVKSPCCEKISVKRDVCSIEEDAKIHSLVSKSGSGNLTFVSKKAGLKRCGKSCRLRWNNYLRPDLKHDNFTSQEEDLIIKLHAAIGSRWSIIAQQLHGRTDNDVKNHWNTKLKKKLSQMGIDPVTHKPFSKLIADYGKIGGSEKHSTQIGSDLKNAIQLKSEPYQLSQEFRNIDSQPNQSPTSPLKFEPIENNFLFNITHGDNHPTDLSMPKVSGASNCINLENESIQASSSSTSSSYSTAAQEALPVIPFSWNDFLLEDAFEPNFDGQEQATMDGLSFSKELVCQIENGTSQSWNIKEVRSKQATSNDFQVSSSTDISFVEAMLGQENETFLSFPNLMEEPFNY* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0520 345 CDD SANT 69 112 IPR001005 -
Lan16g0520 345 SUPERFAMILY Homeodomain-like 16 108 IPR009057 -
Lan16g0520 345 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Lan16g0520 345 Pfam Myb-like DNA-binding domain 20 61 IPR001005 -
Lan16g0520 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan16g0520 345 PANTHER F14D16.11-RELATED 1 345 - -
Lan16g0520 345 Gene3D - 69 130 - -
Lan16g0520 345 SMART sant 66 114 IPR001005 -
Lan16g0520 345 SMART sant 13 63 IPR001005 -
Lan16g0520 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan16g0520 345 CDD SANT 20 61 IPR001005 -
Lan16g0520 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan16g0520 345 Gene3D - 18 66 - -
Lan16g0520 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan16g0520 345 PANTHER F14D16.11-RELATED 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0520 Lan-Chr16 5575358 5578228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0520 1 345 MYB Transcription Factor Family AT3G28470 41.261 1.18e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan16g0520 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0520 K09422 - gmx:100795381 368.237