Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0518 ATGGATTTCACAAATCAATCCATGTCAGATTCTCCACAGAGAAAGATGGGTAGGGGGAAGATTGAGATCAAGAGGATAGAGAACACCACAAATCGCCAAGTCACTTTTTGCAAGAGAAGAAATGGCCTTCTTAAGAAAGCATATGAGTTATCTGTGCTGTGTGATGCTGAGGTTGCTCTAATAGTCTTCTCTACCAGGGGCCGTCTCTATGAATATGCTAATAACAATGTCAAAGCAACTATTGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGACAAATTGCGTGTGCAAATTAGTAACCTGCAAAATAACAACAAGCTAATGATGGGTGAGTCTTTGGGCTCTATGAATGCTAAGGATCTCAAAAATCTTGAGACTAAATTAGAGAAAGGAATTAGCAAGATCCGTTCCAAAAAGAATGAGCTACTATTTGCTGAGATTGAGTACATGCAGAAGAGGGAGTTAGACTTGTACAATAACAACCAGCTTCTTCGAGCAAAGATAGCAGAAAGTGAGAGGAACCAGCATAGCATTAATAATGTATTGCATGGAGGCACAAGCTATGACTCTATGCAGCAGAATCAGCAGCAGCATTTTGACTCACGTGGCTACTTTCAAGTCACAGGATTACAACCCAATAATCAGTATGCACAGCAAGACCACATGTCCCTTCAATTAGTTTGA 738 0.4079 MDFTNQSMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNVKATIERYKKACSDSSGAGSASEANAQFYQQEADKLRVQISNLQNNNKLMMGESLGSMNAKDLKNLETKLEKGISKIRSKKNELLFAEIEYMQKRELDLYNNNQLLRAKIAESERNQHSINNVLHGGTSYDSMQQNQQQHFDSRGYFQVTGLQPNNQYAQQDHMSLQLV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0518 245 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Lan16g0518 245 Coils Coil 102 129 - -
Lan16g0518 245 PANTHER AGAMOUSB 10 239 - -
Lan16g0518 245 PANTHER MADS BOX PROTEIN 10 239 - -
Lan16g0518 245 Coils Coil 139 159 - -
Lan16g0518 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Lan16g0518 245 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Lan16g0518 245 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Lan16g0518 245 MobiDBLite consensus disorder prediction 1 21 - -
Lan16g0518 245 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Lan16g0518 245 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Lan16g0518 245 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Lan16g0518 245 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Lan16g0518 245 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Lan16g0518 245 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Lan16g0518 245 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan16g0518 245 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0518 Lan-Chr16 5447734 5455221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0518 14 245 MADS-box Gene Family AT3G58780 66.525 8.08e-109 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan16g0518 K-box 3.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0518 K09264 - gmx:732595 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0326 4 5371786 5379408 Lan16g0518 16 5447734 5455221 LSH