Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0501 ATGAACGATGGCGTTTGCACTTTCCATCTCGAGAGAATGGGCAGAGAACTCAAATGTCCCATTTGTTGGAGTTTGCTTAATTCTTCAGTTTCACTTACCTGTAACCATGTATTCTGCAATTCATGTATTCTCAAATCGATGAAGTTAGCTTCAGATTGTCCTGTTTGCAAAGTACCTTACACTCGTAGAGAGGTTCGCCCTGCTCCTCAAATGGACAACATGGTCAGCATTTACAAGAGCATGGAAAATGCTTCTGGAATTAGTATGTTTGTCACTCAGAATGTACCTGTTACTAAATTATCAGATAAAGAAAAGCAACATGAAGATGATGATTGTGAAATGAAGGATCTTGGTGAAACTCATAAGAATCATGCACAAAAGAAAAATTCCTTCAGAAAAGAGGAGTCGAAGAAGAAGATTATGACAAGCACAAAAGGTGTTGACATTGCAAAACCATCTTTTCCAGCAAAGAAAAGGATCCAGGTGTCTCAGGATCCTCTTTCAGAAACTCCATTAAAGAATTATAAATTTGGAGGCCCTCTAAGTGAAATGGATAAATTGGGAACAGAAGAGGGTTTGATCTTGGCAAATGAAAAGGACAATCATGCTCTTTCACCTTTCTTTTGGTTAAGAGACGAGGAAGATGGTGAAAAGATAAGTCAGCACTCTAATGGGGATCAACTTATTGATTGTGCAACACCAACTCCTCCTTCATTCAGTGACCTGAAGGACTCTGATGATGAAAGCCCTCCTAAAAAAGCTCCATCAGATGTGGTGCAAAAAAAAGCCTCTGTTAATTTACCTGATAGTGAAATTTTTGAATGGACACAAAGGCCTTTGTCTCCTGAATTATTTTCAAGTCCTGTCAAAATGCAGGTTGAGGATACTGGTGAGATTGATAAAAATCAAGAGGATTTTGTTGCATCGGCACAGGAGCTGGAAAAAAATTGTACAATTGCTGATGCTGACAACATAAAATTTAAGAATTCCAAACAAATAAATGGATTAGATGATAAGTTACCACGAATCGTGGCTTCTCAAATTATAACTTCGGATGGTCAAAATGGGATAAAAAAGTCTACAAAGAGAGGTAGGAAAGCTGGGGGAAAAGCAAGGCAAAGCAAGACTGGAGGGCAAAGAGATCCAATTGATGGAATGGATGTTTATACATATATATCATTAGAAGACAATCAGGAGAAAACATTGGACCATAAGCACAATTCTTCCAATATGGGGAAGACTAATAGAAGAGCCAAGGGGGTTTCATTCAGAACTCGTAGAAATCAAATACCTCAAATGGCTTGCACAGCCTCCAATACGTTAGTTCCGAGTAATGGTGAAGTGGCTATGGCAAATAATTCATCACATAAAGAAGAAATTGAGAAGCATACTCCTCAGGAGGTTTCTGGGAAAAGCATGAGGAAAAGATCTGAAAGACCAAAGCTGGATTATGTGCAGGACCTAGCTGAAGAATTATCTCCAGTGCAGAACAAAACCAATGATTTTGCTGTTTCTCTATCATCAATTTTGACTCCTGCGATGGAAGATATTGGAAAGGCCTCTAGGCAAAGCATAAGAAACTCTTCTAGAAAGTCCATGTCTTGCAATAGAGAACTGGGGAGTACTAAAAAGTTGAAACTTTCCTCTGATGGTATCATTAAGACTAAAAATGATGTAGAAATCCAACCTAATGCAAGTCTTCAACAAATTCCTGTTGTTAAAACTTTGAATGATACATCAAAAGAGACACAATGTCCTTTGACGAATCGACCGCTTTTACAGAAATGTGAGAGCCATATGAAAAAGTATCAATGTGTTTTCTGTCTCTCATCAGAAGAATCAGAGGTTTCTGGACCGATAGTACATTATTATGATGGGAAGCCTGTAACCACAGATTATGAAGGAGGATACAAAGTCACACATTCTCACAAGAATTGCACAGAATGGGCCCCAAATGTATATTTTGTAGATGATAATGCAATAAATCTTGAAGCTGAAATAAGCAGAAGTAAGAGAATTAAATGTTGTTTGTGTGGACTTAAGGGTGCTGCACTAGGTTGTTACGAGAAGAGTTGTCGCAAGAGCTTTCATGTTCCTTGTGCCAAGTTAACTTCTCAATGTCGATGGGACATGGAAAACTTTGTCATGTTGTGCCCTTTGCATGCTTCTTCCAAGTTGCCCTGCGAAAGTTCAGGATCCCAAGAAAGGAGTAACAAAACCACAACTAGAGAGAGTAAAAGCCCTGCTCACAAACATGACACAATAGTCGAAAGTTGGACTACTCGTGGAACATCCAACAAATTAGTACTCTGTTGTTCAGCCCTATCCGTGCAGGAGAGGGGTGTTGTTTCTGAATTTGAAAAAGTGTCCAAGGTTACAGTTTTGAAAAAATGGGATTCAAGTGTCACTCATGTTATAGCATCAACAGATGAAAATGGGGCATGCAGAAGGACCCTCAAAGTATTGTTGGGTATCCTGGAGGGAAAGTGGATTCTCAACATTGATTGGATCAAAGCTTGCATGAAGGAGATGGGACCTGTTGATGAGGGGCGTTATGAAATTAATGTTGACATCCATGGAATCAAGGATGGTCCTCGTCTTGGACGACTGAGAGTACTGAATAAGCAACCAAAACTTTTTAATGGCTACACGTTTTATTTTATGGGACATTTTGAACCGTCATACAAGGGCTATCTGCAAGACCTTGTGATTGCTGCTGGAGGGAATATTCTGCATAGAAAACCAGTCTCTGCTGACCAAGAAACAATGTTTCCTGATATGCATCTATACCAGACCCTCATCATTTACAGCCTGGAGCTTCCTGGTAAGTGCAGTCCTTCAAAAAAGGATAAAATTTTAAACCAAAGGCTATGCGATTCAGAGGCTGTAGCAAGTTCTACAGGTTCCAAGGTAGCAAGTAATACATGGATTCTGAATTCTATTGCAGCCTGCAAGCTCCAAAGCCCTGCTCCATAA 2976 0.3952 MNDGVCTFHLERMGRELKCPICWSLLNSSVSLTCNHVFCNSCILKSMKLASDCPVCKVPYTRREVRPAPQMDNMVSIYKSMENASGISMFVTQNVPVTKLSDKEKQHEDDDCEMKDLGETHKNHAQKKNSFRKEESKKKIMTSTKGVDIAKPSFPAKKRIQVSQDPLSETPLKNYKFGGPLSEMDKLGTEEGLILANEKDNHALSPFFWLRDEEDGEKISQHSNGDQLIDCATPTPPSFSDLKDSDDESPPKKAPSDVVQKKASVNLPDSEIFEWTQRPLSPELFSSPVKMQVEDTGEIDKNQEDFVASAQELEKNCTIADADNIKFKNSKQINGLDDKLPRIVASQIITSDGQNGIKKSTKRGRKAGGKARQSKTGGQRDPIDGMDVYTYISLEDNQEKTLDHKHNSSNMGKTNRRAKGVSFRTRRNQIPQMACTASNTLVPSNGEVAMANNSSHKEEIEKHTPQEVSGKSMRKRSERPKLDYVQDLAEELSPVQNKTNDFAVSLSSILTPAMEDIGKASRQSIRNSSRKSMSCNRELGSTKKLKLSSDGIIKTKNDVEIQPNASLQQIPVVKTLNDTSKETQCPLTNRPLLQKCESHMKKYQCVFCLSSEESEVSGPIVHYYDGKPVTTDYEGGYKVTHSHKNCTEWAPNVYFVDDNAINLEAEISRSKRIKCCLCGLKGAALGCYEKSCRKSFHVPCAKLTSQCRWDMENFVMLCPLHASSKLPCESSGSQERSNKTTTRESKSPAHKHDTIVESWTTRGTSNKLVLCCSALSVQERGVVSEFEKVSKVTVLKKWDSSVTHVIASTDENGACRRTLKVLLGILEGKWILNIDWIKACMKEMGPVDEGRYEINVDIHGIKDGPRLGRLRVLNKQPKLFNGYTFYFMGHFEPSYKGYLQDLVIAAGGNILHRKPVSADQETMFPDMHLYQTLIIYSLELPGKCSPSKKDKILNQRLCDSEAVASSTGSKVASNTWILNSIAACKLQSPAP* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0501 991 Pfam BRCA1 C Terminus (BRCT) domain 793 841 IPR001357 -
Lan16g0501 991 ProSiteProfiles BRCT domain profile. 875 991 IPR001357 -
Lan16g0501 991 SUPERFAMILY RING/U-box 9 79 - -
Lan16g0501 991 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 724 IPR013083 -
Lan16g0501 991 MobiDBLite consensus disorder prediction 222 240 - -
Lan16g0501 991 Gene3D BRCT domain 765 870 IPR036420 -
Lan16g0501 991 MobiDBLite consensus disorder prediction 354 384 - -
Lan16g0501 991 MobiDBLite consensus disorder prediction 116 165 - -
Lan16g0501 991 SUPERFAMILY BRCT domain 768 861 IPR036420 -
Lan16g0501 991 SUPERFAMILY BRCT domain 879 988 IPR036420 -
Lan16g0501 991 Pfam Zinc finger, C3HC4 type (RING finger) 18 56 - -
Lan16g0501 991 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 7 988 IPR031099 GO:0006281|GO:0006974
Lan16g0501 991 CDD BRCT_Bard1_rpt1 768 843 - -
Lan16g0501 991 Pfam PHD-like zinc-binding domain 643 721 - -
Lan16g0501 991 ProSitePatterns Zinc finger RING-type signature. 34 43 IPR017907 -
Lan16g0501 991 MobiDBLite consensus disorder prediction 116 144 - -
Lan16g0501 991 MobiDBLite consensus disorder prediction 216 261 - -
Lan16g0501 991 SMART PHD_3 674 722 IPR001965 -
Lan16g0501 991 SMART ring_2 19 56 IPR001841 -
Lan16g0501 991 Gene3D BRCT domain 876 984 IPR036420 -
Lan16g0501 991 MobiDBLite consensus disorder prediction 453 479 - -
Lan16g0501 991 SMART BRCT_7 877 984 IPR001357 -
Lan16g0501 991 SMART BRCT_7 762 844 IPR001357 -
Lan16g0501 991 ProSiteProfiles Zinc finger RING-type profile. 19 57 IPR001841 -
Lan16g0501 991 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 88 IPR013083 -
Lan16g0501 991 MobiDBLite consensus disorder prediction 403 423 - -
Lan16g0501 991 ProSiteProfiles Extended PHD (ePHD) domain profile. 602 722 IPR034732 -
Lan16g0501 991 ProSiteProfiles BRCT domain profile. 793 854 IPR001357 -
Lan16g0501 991 MobiDBLite consensus disorder prediction 454 479 - -
Lan16g0501 991 MobiDBLite consensus disorder prediction 726 752 - -
Lan16g0501 991 MobiDBLite consensus disorder prediction 241 255 - -
Lan16g0501 991 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 7 988 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0501 Lan-Chr16 5178567 5184837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0501 16 57 C3H Transcription Factor Family AT3G07200 38.095 3.45e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0501 K10683 - gmx:100804958 1216.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0338 4 5516793 5522888 Lan16g0501 16 5178567 5184837 LSH