Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0496 ATGGAAGAGGATGATGAGAATCAATCACATGCATGCAAGTTTCCAAGAATTGGAAGTAAAAGAAATGAGTCTCACAATTGTTCAAGAATTGTGAGGGTATCTAGAGCATGTGGTGGAAAAGATAGGCATAGTAAGGTAATGACTTCAAAGGGTTTAAGAGACAGAAGAGTTAGGCTTTCTGTGACTACAGCTATTGAATTCTATGACCTTCAAGATAGACTTGGTTATGAGCAACCTAGTAAAGCTGTTGAATGGTTAATCAATGCTGCTTCAGATTCAATTTCAGAACTCCCTTCTCTTAACACCACTTTCCCTTATACCCCTAATGAACTAAATGATGAGAAAAGACCATGTTTTGATGAGGTTGATGGAGACACAGACAACTATAACCAAAACCAAAACCAAAGCCAAAACCTTTGTTTGTCTAAATCTGCATGTAGCAGCACTTCTGAGACAAGTAAAGGTTCTACCTTGTCCTTATCAAGGTCTGAGATTCGTGTAAAGGCAAGGGAGAGAGCAAGAGAAAGAGCAGGAAAAGTTAAAGAGAAAGAAAATGAGTCATTTCACATTGTAACAAATCATCATAATCATCACAATGTGACTAAAAATGCTTCTTTCACTGAGCTTCTAACTGGTGGGATTGAAAATGTTGCTACCAAAACAAGTGCTAGTGTTTGTGATGAGAGTAATCTGTTCAACAATAAGGCTAAGCAATGGTCACCTATGGTCATGGATTACTTCAACTCAGGCCTTACTTCAAGAAATGTTTCACCAAACCAAGATCAGCTTCAACATTTCTCTTTCATCCATGACCATAATTTCATACCTTGTTCTCAGTCAAGTGGAAGTGACTACAATCTCAACTTCACAATTTCTCCTAGCCTTGTTGGTTATAATAGGGGGACCCTTCAGTCCAATTCTCAGTCTCATATTATGCCTCATATGCAGAAGTTTAGTTCTTCACATATAGATGGATCAACCAATAATCTACCTTTCTTCATAGGAGGAGTTTCTAATTCAACTTCTGATGCTTCAACCATGGATACTAGTATTAACCATCACCAACAACAACAACAACAACAGCTTCAGTTCTCAACTGTGTTTGGTGGCAGCTTGCAACTATGCTATGGAGATGGAAGCAGGAATTCAGATCAGAAAGGGAAAGCCAAGAACTGA 1176 0.3835 MEEDDENQSHACKFPRIGSKRNESHNCSRIVRVSRACGGKDRHSKVMTSKGLRDRRVRLSVTTAIEFYDLQDRLGYEQPSKAVEWLINAASDSISELPSLNTTFPYTPNELNDEKRPCFDEVDGDTDNYNQNQNQSQNLCLSKSACSSTSETSKGSTLSLSRSEIRVKARERARERAGKVKEKENESFHIVTNHHNHHNVTKNASFTELLTGGIENVATKTSASVCDESNLFNNKAKQWSPMVMDYFNSGLTSRNVSPNQDQLQHFSFIHDHNFIPCSQSSGSDYNLNFTISPSLVGYNRGTLQSNSQSHIMPHMQKFSSSHIDGSTNNLPFFIGGVSNSTSDASTMDTSINHHQQQQQQQLQFSTVFGGSLQLCYGDGSRNSDQKGKAKN* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0496 391 ProSiteProfiles R domain profile. 163 183 IPR017888 -
Lan16g0496 391 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 5 256 IPR005333 GO:0003700
Lan16g0496 391 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 258 391 IPR005333 GO:0003700
Lan16g0496 391 ProSiteProfiles TCP domain profile. 39 97 IPR017887 -
Lan16g0496 391 Pfam TCP family transcription factor 39 181 IPR017887 -
Lan16g0496 391 PANTHER TRANSCRIPTION FACTOR TCP24 5 256 - -
Lan16g0496 391 PANTHER TRANSCRIPTION FACTOR TCP24 258 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0496 Lan-Chr16 5118598 5123013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0496 25 391 TCP Transcription Factor Family AT4G18390 42.243 1.59e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lan16g0496 TCP 7.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0496 - - lang:109333568 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0496 16 5118598 5123013 Lan16g0496 16 5118598 5123013 ECH
Lan4g0345 4 5587613 5596334 Lan16g0496 16 5118598 5123013 LSH