Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0488 ATGAGGAGAAATTGCAATTTGGAACTTGCACTGTTCCCTTCCTACAGTTCTCACCATCACAACAATAACAACAACCCCATAATGGAAGCTTCTAGTGGGAGCTCAAAGATTGAACACCTCCACCAACAACAACAACAACAATGCCAGCAGAAGGAACATCACGACACTATTACCATTTTCTATGACGGAAAGATCTGTGTTTCTGATGTTACAGAGCTTCAGGCTAGATCAATCTTAATGCTTGCAAATAAAAAAATGGAGGAAAGAATGAAAACACCAAGTGGGTTAGAGCCATCTACACCAACAGTAGTGGAATCTCACCAACCATTGTATAGTCCAGCCACTCCTCTTTCAATGAAAAGATCGTTGCAACGGTTCCTCCAGAAAAGAAAGATTAGAAAACAAGAAGCATCTCCATATAATCATCACTAG 432 0.4028 MRRNCNLELALFPSYSSHHHNNNNNPIMEASSGSSKIEHLHQQQQQQCQQKEHHDTITIFYDGKICVSDVTELQARSILMLANKKMEERMKTPSGLEPSTPTVVESHQPLYSPATPLSMKRSLQRFLQKRKIRKQEASPYNHH* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0488 143 SMART tify_2 50 84 IPR010399 -
Lan16g0488 143 Pfam tify domain 57 83 IPR010399 -
Lan16g0488 143 Pfam Jas motif 120 140 IPR018467 -
Lan16g0488 143 MobiDBLite consensus disorder prediction 15 46 - -
Lan16g0488 143 MobiDBLite consensus disorder prediction 95 117 - -
Lan16g0488 143 MobiDBLite consensus disorder prediction 88 117 - -
Lan16g0488 143 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 142 IPR040390 -
Lan16g0488 143 ProSiteProfiles Tify domain profile. 50 84 IPR010399 -
Lan16g0488 143 PANTHER - 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0488 Lan-Chr16 5024902 5027741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0488 1 140 Tify Gene Family AT1G30135 39.716 6.67e-24 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lan16g0488 Jas_motif 3.9e-07 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0488 - - gmx:100500349 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0488 16 5024902 5027741 Lan16g0488 16 5024902 5027741 ECH
Lan4g0346 4 5628179 5630158 Lan16g0488 16 5024902 5027741 LSH