Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0468 ATGGCGACTAAGCAACAACCTTACCATTACCCAACATATAATAATTCAAATGCCCTGTTCAATAATGAAATTAATAGTGTCCAACAACAACTCAATCTAAAACTTCAGATTTTCGAGAAGAACCCAACTAAGATTAAGAACTATGGAATTTGGTTGAGGTACCAGAGTAGGACTGGCTACCACAACATGTACAAGGAGTACCGTGACACCACTCTAAATGGTGCAGTGGAGGCTATGTACAATGAGATGGCTTCCCGCCATCGTGTCCGGTTCCCTTGCATTCAAATTATCAAGACTGCAACCATCGCGGCCAAGCTTTGCAAAAGAGAGAGCACCAAGCAATTCCATAACTCCAAAATCAAGTTCCCATTGGTGTACAAGAAGATTAGGCCACCAACAAGGAAGCTGAAGACCACATACAAGGCAAAGAAACCCAACTTGTTTATGTAA 450 0.4178 MATKQQPYHYPTYNNSNALFNNEINSVQQQLNLKLQIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRFPCIQIIKTATIAAKLCKRESTKQFHNSKIKFPLVYKKIRPPTRKLKTTYKAKKPNLFM* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0468 149 Gene3D - 43 118 - -
Lan16g0468 149 PANTHER 60S RIBOSOMAL PROTEIN L18A 37 108 IPR028877 -
Lan16g0468 149 PANTHER 60S RIBOSOMAL PROTEIN L18A 109 149 IPR028877 -
Lan16g0468 149 PANTHER 60S RIBOSOMAL PROTEIN L18A 37 108 - -
Lan16g0468 149 PANTHER 60S RIBOSOMAL PROTEIN L18A 109 149 - -
Lan16g0468 149 SUPERFAMILY RplX-like 42 117 - -
Lan16g0468 149 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 36 99 IPR023573 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0468 Lan-Chr16 4601641 4605269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0468 36 149 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 88.596 5.29e-75 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0468 K02882 - gmx:100306174 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0468 16 4601641 4605269 Lan16g0468 16 4601641 4605269 ECH
Lan4g0355 4 5816298 5818154 Lan16g0468 16 4601641 4605269 LSH