Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0467 ATGGAGAGCTTTGCGAGGTCCACTGAAGGCTCTGGCTCTGATCCGTCGCTGGAATGGACCGGACACGGTGGTGAAACCGGTCTAGAAGGGTCTATGTGGCAATTGGGATTAGGTGGTGGTGGTGGCGGCCGTGAGGAATCGTATCCGCTACGCCCCGGTGAGGCTGATTGTATGTACTATTTGAGGACTGGCGTCTGTGGCTATGGTTCACATTGTCGATTCAACCATCCTTCTGACCGCGGCGCGGTTATTGGAGCTGCAAAGACCGGGGAGTTTCCGGAACGAGTAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAGGATCATGCAAATTTGGTACATCCTGCAAGTACCACCATCCTAAGGAGGGAGGAGGCACTGCTAACCCTGTCTCGCTAAATTATTATGGATATCCATTGCGACCGGGTGAGAAAGAGTGCTCCTACTATGTGAAAACGGGACAATGCAAGTTTGGTTCAACTTGCAAATTCCATCATCCACAGCCTGCTGATGTCCACATTGCACCACCACCACTGCCAGTTCCCCAAGTTTCACATTTATCTGTGCCTGTGCCTTCACCATTATATCCAACTGTGCAGCCTCCATCTGATCATATATCACAACAACTTAGTGTACTGGTTGCAAGGCCACCTCTGCTTCCTGGCTCATATGTCCAGAGCCCCTATGGCCCTATGGTACTGTCCCCTGCCATGGTCCCGTATTCAGGTTGGGCTCCGTATCAGGCTACTGCGACAAGCCCTGTACTTCCTTCAAGTACTCCATCTAATGTTGGTTCGGCACAGTTGTATGGGATAACCCAGCTAGCTTCACCAGCAGGTGCTTATCCTGGGCCTTATCAGCCTTCAGGTTCCAAAATTGGTCCTTCAAGCAATAGTCAAAAGGAGCACTCACTTCCTGAAAGGCCCGACCAACCAGAATGTCAGCATTACTTGAGAACAGGGGAGTGCAAATTTGGTTCATCTTGTAGGTACCACCATCCACCAGACATGAATGCACCAAAAACGACCATGACCCTCAGTCCTGCGGGACTTCCTTCGCGCCCGGGGGCACCTCCTTGCACTCATTATGCGCAACGTGGAGTTTGTAAGTTTGGCCCTGCATGCAAATTTGATCATCCTATTGCATCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACATGCCGGTTGCACTCTATCCTGTGGCTTCATCAATTGGTACACTTGCTCTGTCATCTTCATCATTGGAGTTGCGGCCTGACCTTCCCCCAGGATCCAACAATGAGGCTGATTCAGTCAGAGTGTCTTCGTCAATAAGCACATTGACCGGGTCAGTCGGCTTCACTTTGTCAACCGGTGAACCTGTTTCTCAACCAAACACCCAACCATCTTCTCAGAGTTCCAATCCTATAGCTGCTACAACTACCACAACAAGCGGCAATGTCTCTCCCACCTCAAGCTAA 1467 0.5065 MESFARSTEGSGSDPSLEWTGHGGETGLEGSMWQLGLGGGGGGREESYPLRPGEADCMYYLRTGVCGYGSHCRFNHPSDRGAVIGAAKTGEFPERVGQPVCQYYMRTGSCKFGTSCKYHHPKEGGGTANPVSLNYYGYPLRPGEKECSYYVKTGQCKFGSTCKFHHPQPADVHIAPPPLPVPQVSHLSVPVPSPLYPTVQPPSDHISQQLSVLVARPPLLPGSYVQSPYGPMVLSPAMVPYSGWAPYQATATSPVLPSSTPSNVGSAQLYGITQLASPAGAYPGPYQPSGSKIGPSSNSQKEHSLPERPDQPECQHYLRTGECKFGSSCRYHHPPDMNAPKTTMTLSPAGLPSRPGAPPCTHYAQRGVCKFGPACKFDHPIASLSYSPSASSLADMPVALYPVASSIGTLALSSSSLELRPDLPPGSNNEADSVRVSSSISTLTGSVGFTLSTGEPVSQPNTQPSSQSSNPIAATTTTTSGNVSPTSS* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0467 488 SUPERFAMILY CCCH zinc finger 98 123 IPR036855 GO:0046872
Lan16g0467 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 310 335 IPR000571 GO:0046872
Lan16g0467 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 357 380 IPR000571 GO:0046872
Lan16g0467 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 168 IPR000571 GO:0046872
Lan16g0467 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 122 IPR000571 GO:0046872
Lan16g0467 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 53 77 IPR000571 GO:0046872
Lan16g0467 488 SUPERFAMILY CCCH zinc finger 311 336 IPR036855 GO:0046872
Lan16g0467 488 MobiDBLite consensus disorder prediction 1 25 - -
Lan16g0467 488 Gene3D - 297 385 - -
Lan16g0467 488 MobiDBLite consensus disorder prediction 1 15 - -
Lan16g0467 488 SUPERFAMILY CCCH zinc finger 55 79 IPR036855 GO:0046872
Lan16g0467 488 ProSiteProfiles Zinc finger C3H1-type profile. 308 336 IPR000571 GO:0046872
Lan16g0467 488 MobiDBLite consensus disorder prediction 445 488 - -
Lan16g0467 488 Gene3D - 51 123 - -
Lan16g0467 488 SMART c3hfinal6 95 122 IPR000571 GO:0046872
Lan16g0467 488 SMART c3hfinal6 51 78 IPR000571 GO:0046872
Lan16g0467 488 SMART c3hfinal6 308 335 IPR000571 GO:0046872
Lan16g0467 488 SMART c3hfinal6 354 381 IPR000571 GO:0046872
Lan16g0467 488 SMART c3hfinal6 141 168 IPR000571 GO:0046872
Lan16g0467 488 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Lan16g0467 488 ProSiteProfiles Zinc finger C3H1-type profile. 354 382 IPR000571 GO:0046872
Lan16g0467 488 MobiDBLite consensus disorder prediction 281 313 - -
Lan16g0467 488 Gene3D - 124 176 - -
Lan16g0467 488 ProSiteProfiles Zinc finger C3H1-type profile. 51 79 IPR000571 GO:0046872
Lan16g0467 488 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Lan16g0467 488 SUPERFAMILY CCCH zinc finger 143 169 IPR036855 GO:0046872
Lan16g0467 488 PANTHER PROTEIN PHOSPHATASE RELATED 1 478 - -
Lan16g0467 488 SUPERFAMILY CCCH zinc finger 358 384 IPR036855 GO:0046872
Lan16g0467 488 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0467 Lan-Chr16 4585833 4594863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0467 1 447 C2H2 Transcription Factor Family AT5G18550 55.819 2.00e-148 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan16g0467 zf-CCCH 3.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0467 - - gmx:100789405 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0356 4 5820861 5831216 Lan16g0467 16 4585833 4594863 LSH
Lan12g1289 12 18673748 18680970 Lan16g0467 16 4585833 4594863 PCT
Lan1g1008 1 20489331 20493052 Lan16g0467 16 4585833 4594863 PCT
Lan1g0046 1 249700 253773 Lan16g0467 16 4585833 4594863 PCT
Lan16g0467 16 4585833 4594863 Lan12g1289 12 18673748 18680970 PCT
Lan16g0467 16 4585833 4594863 Lan1g1008 1 20489331 20493052 PCT
Lan16g0467 16 4585833 4594863 Lan1g0046 1 249700 253773 PCT