Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0466 ATGTCCACTTCTAGAACCTCAAATACTTCCCCCAAAGGATACACTAACCAAACCCAAATGAACTCATTTTTTCTTCAGCATAACACATCATCACCTTGTAGTGAAAGAAGAGGCAGAAGAAAACAACAAGAACCAGGTAGGTTTCTTGGTGTAAGGAAACGCCCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACTAAAGAAAGACATTGGCTTGGAACATTTGATACTGCTGAAGAAGCTGCACTTGCTTATGATAGAGCTGCATTCTCCATCAAAGGTAGCCAAGCAAGAACAAATTTCATTTACTCTCACAATAATAGCACCAGTTTTCATAATCTCATTACTCCTATGCAAGTTCAATCTCTTTTACCAACTCCACAGTTTATAACAAACACTCAAAATACTTCCAACTTCAACAATAATGCTATGTGTAATGAAACTGAAACTGCATTTGCTTCAGCTAAGGATGATAACTTTTTCTTCTCCAATGATTCTAATAATAACTCTGGCTATTTGGAATGCATAGTTCCTGATAGTTGTTTAAGACCTGTTTCAAGTGACCAAAAGGGTAGCTATATTAACACAAAAACCATGCAGGGTCAGTCATATTTTGACAACAATGCATTTTCTCAAGAAGCCTTAAGCATGCAAACAACAATGCAAGTTTCTAACTTTGAAGGTTCTTCTTACCAAAATGAACCTAGTCAAGGATTATTGGATAATCAACAATCATGGGATTGTAATTCTAGTGAACTTTCATCTATATTTAATAAACCATTAAGGTTTGAAGATGAGTACTGCATGGGTGCATTGTGTCCTATCAGTGAAAGTCCAAGCTATGAGACTGTTTCTTCATGCTCTCCATCATTTCCTCCTCCCTTTGGGGATATTGACTTGGGATACTCACCATCACCTTTCTAA 930 0.371 MSTSRTSNTSPKGYTNQTQMNSFFLQHNTSSPCSERRGRRKQQEPGRFLGVRKRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAAFSIKGSQARTNFIYSHNNSTSFHNLITPMQVQSLLPTPQFITNTQNTSNFNNNAMCNETETAFASAKDDNFFFSNDSNNNSGYLECIVPDSCLRPVSSDQKGSYINTKTMQGQSYFDNNAFSQEALSMQTTMQVSNFEGSSYQNEPSQGLLDNQQSWDCNSSELSSIFNKPLRFEDEYCMGALCPISESPSYETVSSCSPSFPPPFGDIDLGYSPSPF* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0466 309 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Lan16g0466 309 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Lan16g0466 309 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Lan16g0466 309 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 305 - -
Lan16g0466 309 MobiDBLite consensus disorder prediction 1 52 - -
Lan16g0466 309 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Lan16g0466 309 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Lan16g0466 309 MobiDBLite consensus disorder prediction 1 32 - -
Lan16g0466 309 MobiDBLite consensus disorder prediction 33 48 - -
Lan16g0466 309 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Lan16g0466 309 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 305 - -
Lan16g0466 309 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Lan16g0466 309 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0466 Lan-Chr16 4583529 4584555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0466 1 186 AP2-EREBP Transcription Factor Family AT5G18560 46.341 5.82e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan16g0466 AP2 3.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0466 - - gmx:100812047 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0357 4 5833878 5834985 Lan16g0466 16 4583529 4584555 LSH
Lan12g1290 12 18682894 18683902 Lan16g0466 16 4583529 4584555 PCT
Lan1g0045 1 247089 248487 Lan16g0466 16 4583529 4584555 PCT
Lan16g0466 16 4583529 4584555 Lan12g1290 12 18682894 18683902 PCT
Lan16g0466 16 4583529 4584555 Lan1g0045 1 247089 248487 PCT