Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0460 ATGGCGAGACCTACGAAGACGCAGTTCTCTTCCGACGACGAACCACTTTCCAACGCTTCCAGTTCCTCAGAGGAAGAGCAGCAGCAGCAAGAAATGAATGAACAAGATGATGAAGATGAGCTTGAAGCGGTGGCTCGTTCTGCTGGTTCCGGTGATGATGATAACCCTCCCGATTCCGATGAAGACTCTCCACCTGCTCAAGATGCTGACGAGGACGAAGAGGGTGGAGATGATGTTGATCCTGAAATAAGCAAGCGCGAGAAGGCTAGATTAAGGGAAATGGAAAAGATGAAGAAACAGAAGATTCAAGAGATATTGGATGCACAAAATGCTTCCATTGATGCTGATATGAACAATAGAGGAAAGGGGCGGCTGAAGTATCTCTTACAGCAGACGGAACTATTTGCTCATTTTGCAAAAGGTGATCAATCTTCATCTCAGAAGAAGACAAGGGGAAGGGGCCGTCATGCATCAAAAGTGACAGAAGAGGAGGAAGATGAAGAATACCTAAAAGAAGAAGACGATGTTGCGAACAACACACGTCTTCTGACACAACCATCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTGAACTGGCTCATACGATTGTATGAAAATGGAATAAACGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCCTTATTGGGTTATTTGCACGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAACGAGATTCGCCGCTTTTGTCCTGTTTTGCGTGCAATTAAGTTCCTTGGCAACCCTGATGAAAGGAGGCATATAAAAGAGGAATTATTGGTCGCTGGTAAGTTTGATGTTTGTGTTACGAGTTTTGAAATGGCAATCAAGGAAAAGTCTGCTTTGCGTAGATTTAGTTGGCGCTATATAATTATTGATGAAGCCCATCGAATCAAGAATGAGAATTCCCTCCTGTCCAAAACAATGAGGATCTACAGTACAAACTATCGGCTCCTTATTACTGGCACACCACTTCAGAACAATCTCCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAAGAGGTTGTTCAACAATTACACAAGGTACTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTCGAAAAAGGGTTGCCTCCAAAAAAGGAAACCATTCTCAAAGTAGGCATGTCACAGATGCAGAAGCAGTATTATAAAGCACTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAAAGGAAGCGCCTACTGAATATAGCTATGCAACTTCGTAAATGTTGTAATCACCCATACCTTTTTCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCAAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTCCAAGGATATCAATATTGTCGCATAGATGGTAATACTGGTGGAGATGAACGTGATGCCTCCATTGAGGCTTTTAACAAACCGGGAAGTGAGAAATTTGTCTTCTTGTTGTCAACTCGAGCTGGAGGTCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGACAGTGACTGGAATCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATAGGTCAAAAGAAAGAAGTTCAAGTTTTCCGGTTTTGCACAGAGTATACAATTGAGGAGAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTCGATGCTTTGGTGATTCAGCAAGGGCGACTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTACAGATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACGGCTGAGCTCGATGCCAAGATGAAGAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGACGAGAAGGATGAGAACAAAGTTGATTTCAAAAAAATTGTAAGCGATAATTGGATTGAACCATCCAAAAGAGAGCGAAAGCGCAATTACTCAGAGTCTGAATATTTCAAGCAAACAATGCGCCAAGGTGGTCCTACTAAACCCAAGGAGCCCCGTATTCCTAGGATGCCCCAGTTGCATGATTTTCAGTTTTTCAACACACATAGGCTGAGTGAGCTGTATGAAAAGGAAGTGCGCTATCTTGTGCAAGCACATCAGAAGAATCAAGTAAAGGACTCAATAGATGTTGATGAACCAGAAGAGCTGGGAGATCCATTGACTGCTGAGGAGTTGGAAGAAAAGGAAAGTCTGCTAGAGCAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATACTTTCATCAGAGCTTGTGAAAAGTATGGTAGAAATGATATTAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCGATGGTCTTCAAAGAAAGATACAAGGAATTAAATGACTATGACCGGATTATTAAAAACATTGAGAGAGGGGAGGCCAGAATTTCTCGGAAAGATGAGATCATGAGAGCCATTGGGAAGAAGTTGGACCGGTACAAGAATCCATGGCTAGAGTTGAAGGTTCAGTATGGTCAAAACAAGGGGAAGCTATACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTGAAGGCAGCATTTCGAACATCACCTTTGTTTCGTTTTGATTGGTTTGTTAAGTCTCGTACAACACAGGAGCTTGCAAGGAGGTGTGACACTCTTATTCGGCTGATAGAAAAGGAAAACCAAGAATATGATGAGAGGGAAAGACAAGCTCGCAAAGAGAAGAAACTAGCCAAGAACAATACCCCATCAAAGCGAGCCTCGGCAAGACAAACAGAGATTCCATCTTCTAAGAAGCGGAGACAGTTAACAATTGATGATTATTCGACGGGGAAGAGGAGAAAATAA 3201 0.4183 MARPTKTQFSSDDEPLSNASSSSEEEQQQQEMNEQDDEDELEAVARSAGSGDDDNPPDSDEDSPPAQDADEDEEGGDDVDPEISKREKARLREMEKMKKQKIQEILDAQNASIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKTRGRGRHASKVTEEEEDEEYLKEEDDVANNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIKEELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRIYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFQGYQYCRIDGNTGGDERDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKVDFKKIVSDNWIEPSKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLVQAHQKNQVKDSIDVDEPEELGDPLTAEELEEKESLLEQGFSSWSRKDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAMVFKERYKELNDYDRIIKNIERGEARISRKDEIMRAIGKKLDRYKNPWLELKVQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLIEKENQEYDERERQARKEKKLAKNNTPSKRASARQTEIPSSKKRRQLTIDDYSTGKRRK* 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0460 1066 MobiDBLite consensus disorder prediction 1015 1032 - -
Lan16g0460 1066 Coils Coil 84 111 - -
Lan16g0460 1066 Gene3D - 932 1035 - -
Lan16g0460 1066 MobiDBLite consensus disorder prediction 139 172 - -
Lan16g0460 1066 MobiDBLite consensus disorder prediction 1015 1066 - -
Lan16g0460 1066 Pfam Helicase conserved C-terminal domain 496 608 IPR001650 -
Lan16g0460 1066 Gene3D - 414 706 IPR027417 -
Lan16g0460 1066 SUPERFAMILY Homeodomain-like 847 897 IPR009057 -
Lan16g0460 1066 MobiDBLite consensus disorder prediction 1 28 - -
Lan16g0460 1066 PANTHER SNF2/RAD54 HELICASE FAMILY 10 1066 - -
Lan16g0460 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 408 IPR027417 -
Lan16g0460 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 691 IPR027417 -
Lan16g0460 1066 Pfam SNF2-related domain 206 473 IPR000330 GO:0005524|GO:0140658
Lan16g0460 1066 MobiDBLite consensus disorder prediction 1 96 - -
Lan16g0460 1066 Pfam SLIDE 901 1011 IPR015195 GO:0003677|GO:0005634|GO:0006338
Lan16g0460 1066 SMART ultradead3 189 381 IPR014001 -
Lan16g0460 1066 SMART sant 946 1007 IPR001005 -
Lan16g0460 1066 SMART sant 844 893 IPR001005 -
Lan16g0460 1066 ProSiteProfiles SANT domain profile. 843 895 IPR017884 -
Lan16g0460 1066 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 756 846 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lan16g0460 1066 SMART helicmild6 524 608 IPR001650 -
Lan16g0460 1066 CDD DEXHc_SMARCA1_SMARCA5 190 410 IPR044754 GO:0005524
Lan16g0460 1066 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 370 IPR014001 -
Lan16g0460 1066 CDD SF2_C_SNF 494 619 - -
Lan16g0460 1066 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 649 IPR001650 -
Lan16g0460 1066 Gene3D - 844 898 - -
Lan16g0460 1066 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 10 1066 - -
Lan16g0460 1066 Gene3D iswi atpase 899 931 - -
Lan16g0460 1066 MobiDBLite consensus disorder prediction 54 78 - -
Lan16g0460 1066 Pfam HAND 757 838 IPR015194 GO:0003677|GO:0006338|GO:0031491
Lan16g0460 1066 Coils Coil 994 1032 - -
Lan16g0460 1066 SUPERFAMILY Homeodomain-like 899 1021 IPR009057 -
Lan16g0460 1066 MobiDBLite consensus disorder prediction 79 96 - -
Lan16g0460 1066 MobiDBLite consensus disorder prediction 1043 1066 - -
Lan16g0460 1066 CDD SANT 847 891 IPR001005 -
Lan16g0460 1066 Gene3D ISWI, HAND domain 745 843 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lan16g0460 1066 Gene3D - 194 409 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0460 Lan-Chr16 4521027 4529225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0460 214 635 RAD5 or RAD16-like Gene Family AT1G02670 27.327 3.53e-42 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan16g0460 SNF2_N 3.7e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0460 K11654 - gmx:100809750 1899.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1005 1 20475861 20483134 Lan16g0460 16 4521027 4529225 PCT
Lan1g0037 1 205735 214079 Lan16g0460 16 4521027 4529225 PCT
Lan16g0460 16 4521027 4529225 Lan1g1005 1 20475861 20483134 PCT
Lan16g0460 16 4521027 4529225 Lan1g0037 1 205735 214079 PCT