Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0458 ATGGAATCCTCTGCCAATGAACAACGTCTTCATTTTGGAAAAATGGAATATGGCTGCAAACATTATAGGAGAAGATGCATGATTCGTGCACCATGCTGCAATGAGATATATTCATGTCGTCATTGTCACAATGAAGCAACGAGTGTGCTGAGGAATTTTTGTCGACATGATCTTGTTCGCCAAGATGTTAAACATGTTGTTTGTTCAGTTTGTGACACAGAGCAACCGGTTGCTCAAGTTTGCACAAACTGTGGTGTCAGAATGGGAGAATATTTCTGTGACATATGCAAATTCTTTGATGATGATACAGGGAAACAACAGTTTCATTGTGATGAATGTGGGATTTGCAGAGTTGGTGGTCAAGAGAACTTTTTCCACTGCAACAAGTGTGGATCTTGTTATTCGGTTGCTCTGCGCGATAATCATTCATGTGTAGAGAATTCCATGAGGCATCATTGTCCCATTTGTTATGAGTACCTTTTTGACTCAATGAAAGACACTGCTGTAATGAAATGTGGTCACACAATGCATTGCGAATGTTACGACGAGATGATATACCGCGAAAAGTTCTGTTGTCCCATATGCTCCAAATCAGTGGTTGATATGTCTAGGGAGTGGAAGAGAATTGATGAAGAGATCGAAGCAACTGTCATGCCCGAAGATTATCGGTATAAGAAGGTTTGGATACTTTGTAATGACTGCAATGACACAACTCAGGTTTACTTTCACATTATCGGGCAAAAATGCGGTCGCTGCAGTTCATATAATACTCGTACAATCGCTCCTCCTGTTCTTCCTCAATGA 804 0.4067 MESSANEQRLHFGKMEYGCKHYRRRCMIRAPCCNEIYSCRHCHNEATSVLRNFCRHDLVRQDVKHVVCSVCDTEQPVAQVCTNCGVRMGEYFCDICKFFDDDTGKQQFHCDECGICRVGGQENFFHCNKCGSCYSVALRDNHSCVENSMRHHCPICYEYLFDSMKDTAVMKCGHTMHCECYDEMIYREKFCCPICSKSVVDMSREWKRIDEEIEATVMPEDYRYKKVWILCNDCNDTTQVYFHIIGQKCGRCSSYNTRTIAPPVLPQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0458 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Lan16g0458 267 Pfam CHY zinc finger 19 98 IPR008913 GO:0008270
Lan16g0458 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 225 IPR013083 -
Lan16g0458 267 SUPERFAMILY RING/U-box 152 201 - -
Lan16g0458 267 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Lan16g0458 267 ProSiteProfiles Zinc finger CHY-type profile. 12 86 IPR008913 GO:0008270
Lan16g0458 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 267 - -
Lan16g0458 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Lan16g0458 267 Gene3D - 226 262 - -
Lan16g0458 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Lan16g0458 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Lan16g0458 267 SMART ring_2 153 195 IPR001841 -
Lan16g0458 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 267 - -
Lan16g0458 267 Pfam Zinc finger, C3HC4 type (RING finger) 153 195 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0458 Lan-Chr16 4504697 4508966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0458 14 266 C2H2 Transcription Factor Family AT3G18290 38.760 4.21e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0458 K10144 - tcc:18603446 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0640 19 12117384 12120902 Lan16g0458 16 4504697 4508966 LSH
Lan1g1003 1 20467203 20470919 Lan16g0458 16 4504697 4508966 PCT
Lan16g0458 16 4504697 4508966 Lan1g1003 1 20467203 20470919 PCT