Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0455 ATGGGGTGTGTGTTAGCGAAACAGTCATCTGCGGCCGAGGCTGCGGCGGAGAGGGAGTGGGAGAGGAGGAGGAGGAGGAGGAGGGAGGAGGAGAAGAGAGAGGAAGTGAAAGATGAAGTGGTTGAGGGTGAGACTGGGAATGGTGGTGGAGAGGAGAAAAGGGGAAGGTCTTCGAGAAGGCGATCTTCGAAGCCGAATCCTCGGCTGAGCAATCCGCCTGGCCATGTTCATGGTGAGCAGGTGGCAGCAGGGTGGCCATCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATCAATGGATTGACCCCTAGAAGGGCTGATACCTTTGAGAAGCTTGATAAGATTGGACAAGGTACATACAGCAATGTTTATAAAGCAAGGGATACTTTAACAGGGAAAATTGTGGCCCTAAAGAAGGTTCGTTTCGACAACTTAGAGCCCGAGAGTGTGAAATTCATGGCTAGAGAGATTCTGATTCTGCGTCGTCTGGATCATCCAAATGTTGTGAAACTGGAAGGCTTGGTGACTTCTAGAATGTCATGCAGTTTGTATCTTGTATTTGAATACATGGTGCATGATTTGGCTGGACTTGCAACAAACCCAGCTATTAAGTTGACAGAGTCACAGGTTAAATGCTTCATGCATCAACTATTTTCTGGGTTGGAACATTGTCACAACCGCCATGTGCTGCATCGTGATATAAAAGGGTCAAACCTTCTTATTGACAGTGAAGGAGTTCTTAAGATTGCTGATTTTGGATTAGCTTCTTTCTTTGATCCTAATCATAGGCACCCTATGACTAGTAGAGTCGTGACTTTATGGTATCGACCTCCAGAACTTCTTCTTGGGGCCACTGAATATGGTGTAGGAGTGGATCTGTGGAGTGCTGGCTGCATTCTTGCAGAATTATTGGCTGGAAAACCTATCATGCCTGGTCGAACAGAGGTAGAGCAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGATGAATACTGGAAAAAGTCAAAGTTACCACATGCTACCCTTTTTAAACCCCAACGGTCATACAAGCGGTGCATAGCAGAGACATTTAAAGATTTTCCGCCATCATCCCTGCCACTAATCGAGACCCTTCTTTCAATTGATCCAGCTGAACGTCAGACTGCCACTGCTGCATTGAATAGTGAATTCTTTACAACAAAACCTTATGCGTGTGAACCCTCTAGCCTTCCGAAATATCCTCCGAGCAAGGAGATGGATACAAAGCTACGGGATGAAGAAGCTAGAAGACTGAGAGCAGCTAGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCCACGTGACCGAGTCGGAAGAGGAATCGCTGTTCCAGAGGCCAATGCTGAACTGCAAGCAAATATTGACAGACGGCGAATGTTAACACATGCTAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAACTCTAGGCTATTCTTTAGGTTCTTCACATCACATGGATCCAGGTTTTGACCCTTCTGATGTTCCATTTAGTTCCACAAACTTGTCACAACCTAAGGCACATATCCAAACCTGGTCTGGTCCATTGGTAGAACCTGCTACTTTGGATGCACCAAGGAGAAAGAAGAAACATGGTAGGTGA 1641 0.4613 MGCVLAKQSSAAEAAAEREWERRRRRRREEEKREEVKDEVVEGETGNGGGEEKRGRSSRRRSSKPNPRLSNPPGHVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPAIKLTESQVKCFMHQLFSGLEHCHNRHVLHRDIKGSNLLIDSEGVLKIADFGLASFFDPNHRHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATLFKPQRSYKRCIAETFKDFPPSSLPLIETLLSIDPAERQTATAALNSEFFTTKPYACEPSSLPKYPPSKEMDTKLRDEEARRLRAASKANADGVKKSRPRDRVGRGIAVPEANAELQANIDRRRMLTHANAKSKSEKFPPPHQDGTLGYSLGSSHHMDPGFDPSDVPFSSTNLSQPKAHIQTWSGPLVEPATLDAPRRKKKHGR* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0455 546 ProSiteProfiles Protein kinase domain profile. 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0455 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Lan16g0455 546 Gene3D Phosphorylase Kinase; domain 1 96 190 - -
Lan16g0455 546 SUPERFAMILY Protein kinase-like (PK-like) 103 397 IPR011009 -
Lan16g0455 546 MobiDBLite consensus disorder prediction 472 546 - -
Lan16g0455 546 MobiDBLite consensus disorder prediction 14 58 - -
Lan16g0455 546 CDD STKc_CDK9_like 108 392 - -
Lan16g0455 546 MobiDBLite consensus disorder prediction 1 80 - -
Lan16g0455 546 Pfam Protein kinase domain 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0455 546 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Lan16g0455 546 PANTHER CELL DIVISION PROTEIN KINASE 32 545 - -
Lan16g0455 546 MobiDBLite consensus disorder prediction 507 523 - -
Lan16g0455 546 MobiDBLite consensus disorder prediction 426 446 - -
Lan16g0455 546 PANTHER CYCLIN-DEPENDENT KINASE 32 545 - -
Lan16g0455 546 SMART serkin_6 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0455 546 Gene3D Transferase(Phosphotransferase) domain 1 191 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0455 Lan-Chr16 4486363 4491527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0455 103 430 Core Cell Cycle Gene Families AT5G10270 51.453 2.06e-116 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lan16g0455 Pkinase 6.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0455 K08819 - gmx:100779413 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0362 4 5877220 5883922 Lan16g0455 16 4486363 4491527 LSH
Lan19g0642 19 12129501 12135772 Lan16g0455 16 4486363 4491527 LSH