Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0453 ATGCCCACTACGCTAAGAACCATAATCCACGACCTCAAATCTCGATCCCACCGTGTAATACAAGACGCTTCTTCAATTGATGCGGCGGTGGTTAGCGACGGTTTAACTCAGAGTTACTGGGCCCACATGCCACAGGAACTACTGAGAGAAGTGCTTATCAGAATCGAAGCTTCGGAGGGCACGTGGCCGAAGAGGAAGAGCGTGGTGGCATGTGCTGGAGTGTGCCGTAGCTGGAGATACATTACTAAGGAAATTGTTAAAAGACCTCAATTTTCTTCCAGAATCACTTTCCCCATTTCTGTTAAGCAGCCTGGCCCTAGGGAGCATCTCCTCCACTGCTTTATAAAGCGGAACCGGTCCACCCAAACATATTACTTGTATCTCAGCTTAACTAGTTCACTAGCTGATGATGGGAAGTTCCTTATGGCTGCAAGAAAGTGCCGACGTCCCACCAGCACAGATTATATGATCTCTTTTGACGCAGATGATATGTCAAAGGGAAGCAACACCCACGTTGGGAGACTGAGATCAAATTTTCTGGGAACCAAGTTTACAATCTATGATGCCCAGCCGCCTCATGCAGAGGCAAAGATTTCAAAAAGTCGCTCCTCTCGGTTCGCGAATCTAAAACAAGTTTCACCCAGGGTTCCTACAGGCAACTATATAGTGGCCCACATCTCATATGATTTGAATGTGCTTGGCTCCAGGGGGCCTAGGAGAATGCATTGTGCCTTGGATTCCATTCCTGCCTCTGCAATTGGACCAGGAGGGATAGACCCTACACAGACTGAACTGTCTCATAAAAACAGAGATACATTTTGTTCATCACCGTTTTCTCGATCAGAATCAAATTCTGTGAATAACTCCATATCTGGAGCCCTTGGTGAACAAAAGGATGGTGGACTAGTGTTGAAAAACAAGGCTCCCAGGTGGCACGAGCAGCTGCAGTGTTGGTGCTTAAACTTTGATGGACGGGTAACGATTGCCTCTGTTAAAAACTTTCAGCTGGTGGCTTCCCCGGAAAATGGTCCTGCTGGACCAGAACATGATGAGATCATTCTCCAATTTGGAAAAGTTGGGAAGGACATGTTTACGATGGATTACCGGTACCCGATCTCAGCATTTCAGGCATTTGCGATTTGCCTTAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1179 0.4673 MPTTLRTIIHDLKSRSHRVIQDASSIDAAVVSDGLTQSYWAHMPQELLREVLIRIEASEGTWPKRKSVVACAGVCRSWRYITKEIVKRPQFSSRITFPISVKQPGPREHLLHCFIKRNRSTQTYYLYLSLTSSLADDGKFLMAARKCRRPTSTDYMISFDADDMSKGSNTHVGRLRSNFLGTKFTIYDAQPPHAEAKISKSRSSRFANLKQVSPRVPTGNYIVAHISYDLNVLGSRGPRRMHCALDSIPASAIGPGGIDPTQTELSHKNRDTFCSSPFSRSESNSVNNSISGALGEQKDGGLVLKNKAPRWHEQLQCWCLNFDGRVTIASVKNFQLVASPENGPAGPEHDEIILQFGKVGKDMFTMDYRYPISAFQAFAICLSSFDTKIACE* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0453 392 ProSitePatterns Tub family signature 2. 377 392 IPR018066 -
Lan16g0453 392 PANTHER TUBBY-RELATED 5 392 - -
Lan16g0453 392 Pfam F-box domain 40 87 IPR001810 GO:0005515
Lan16g0453 392 PRINTS Tubby superfamily signature 155 171 IPR000007 -
Lan16g0453 392 PRINTS Tubby superfamily signature 171 195 IPR000007 -
Lan16g0453 392 PRINTS Tubby superfamily signature 220 247 IPR000007 -
Lan16g0453 392 PRINTS Tubby superfamily signature 304 321 IPR000007 -
Lan16g0453 392 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Lan16g0453 392 PRINTS Tubby superfamily signature 349 368 IPR000007 -
Lan16g0453 392 PRINTS Tubby superfamily signature 370 392 IPR000007 -
Lan16g0453 392 SUPERFAMILY Tubby C-terminal domain-like 89 392 IPR025659 -
Lan16g0453 392 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 5 392 - -
Lan16g0453 392 SUPERFAMILY F-box domain 29 83 IPR036047 GO:0005515
Lan16g0453 392 Gene3D Tubby Protein; Chain A 97 392 IPR025659 -
Lan16g0453 392 Pfam Tub family 101 387 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0453 Lan-Chr16 4473315 4477960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0453 13 392 TUB Transcription Factor Family AT2G47900 68.668 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan16g0453 Tub 6.3e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0453 K19600 - gmx:100778346 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0644 19 12160244 12164488 Lan16g0453 16 4473315 4477960 LSH