Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0446 ATGCAAGCAGCTCAAGCACCACCCAATTATGAAGTTTCTGAGATTTCTCACGAGGCTGAACCCAAGCTAAGCAAAGAGGTTTCGGAAAATGGACCCTGTGGGCGGCGTCCAGATATTTCACTTCAAGTTCCACCTAGACCGGTAGGGTTTGGCAGCACTAGTGGTGTAAGGGTTCTTGACCATTCTCAAAGTTTCTCTAAAGGGATTGCATCATCAAAAAGCTTCTTGCGAGCCTTGAGCTTCAAAAGGAAAGGAAATGTAGTAGATGGCGAAAGAAGTAGCCTCCTTAATTCAAACCCTCCAGCATCTGCATCAAATCCATCCCCTTCAGTTTCTACACCCGTTTCTGCAAGGACATATTATGAACAGACTAAGATACATAAAGATGTTGTTCGCCCTAAGGTTTCAAGGTCCCTTTCTGTACCTGTACGAAATGTTGTAATTGTAAGATCTGTCTCTTTTTCTACCCGTAGTGAGAAGGAACAAGATTCAAATGATGATCAAATAACTCCCGTGCCAGTAGAAACGACCGCCGATGAAGAAATTCCTGAAGAGGAAGCGGTGTGCAGGATATGTCTTGATGTGTGTGATGAAAGAAATACCTTTAAAATGGAATGCAGTTGCAAAGGCGATCTGAGATTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAAGGAAATAAGAAATGTGAGGTGTGTGGGCAAGAGGTTGAGAACTTACCTGTGACATTGCTTCGTTTTTCCAGCTCTGTTCAACGGCAAGGCAGACCATCGCAGGGTCAACAGAACCTACACCCAGAGTCGATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTTCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATATGAAGACTCAAGCGATCATTATAGCAGCGCCATTTGCCTTTACCATGGGCCTCCTGGCATCTATTTTTGCCGTCATCCTTGCAATTAGGGAGTATATATGGACATATGCTGCACTTGAGTTTGCTCTTGTGGCTTTAACCGTGCATCTTTTTTATTCTATGTTGCATATGAAGGCCATTTATGCAATACTACTTTCATCAGTTCTGGGTTTTGGAATTGCTATTGGTATCAACTATGCATATATCCAATATGCTGCATGGCGACTTCAAGTCTCTCATGATGATAGCCCAGTATGA 1194 0.4288 MQAAQAPPNYEVSEISHEAEPKLSKEVSENGPCGRRPDISLQVPPRPVGFGSTSGVRVLDHSQSFSKGIASSKSFLRALSFKRKGNVVDGERSSLLNSNPPASASNPSPSVSTPVSARTYYEQTKIHKDVVRPKVSRSLSVPVRNVVIVRSVSFSTRSEKEQDSNDDQITPVPVETTADEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECAIKWFSTKGNKKCEVCGQEVENLPVTLLRFSSSVQRQGRPSQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPDMKTQAIIIAAPFAFTMGLLASIFAVILAIREYIWTYAALEFALVALTVHLFYSMLHMKAIYAILLSSVLGFGIAIGINYAYIQYAAWRLQVSHDDSPV* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0446 397 MobiDBLite consensus disorder prediction 91 116 - -
Lan16g0446 397 ProSiteProfiles Zinc finger RING-CH-type profile. 181 242 IPR011016 GO:0008270
Lan16g0446 397 PANTHER OS02G0165000 PROTEIN 100 397 - -
Lan16g0446 397 PANTHER OS02G0165000 PROTEIN 1 101 - -
Lan16g0446 397 SUPERFAMILY RING/U-box 185 239 - -
Lan16g0446 397 MobiDBLite consensus disorder prediction 89 116 - -
Lan16g0446 397 CDD RING_CH-C4HC3_MARCH 189 236 - -
Lan16g0446 397 Pfam RING-variant domain 189 235 IPR011016 GO:0008270
Lan16g0446 397 PANTHER ZINC FINGER PROTEIN 1 101 - -
Lan16g0446 397 PANTHER ZINC FINGER PROTEIN 100 397 - -
Lan16g0446 397 MobiDBLite consensus disorder prediction 1 50 - -
Lan16g0446 397 MobiDBLite consensus disorder prediction 15 32 - -
Lan16g0446 397 SMART ringv_2 188 236 IPR011016 GO:0008270
Lan16g0446 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 243 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0446 Lan-Chr16 4418713 4424140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0446 202 297 C3H Transcription Factor Family AT5G59000 30.208 3.77e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0446 - - gmx:100777100 602.053