Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0444 ATGAACACCAACGACCCTTCATCTTCTCCCATATGGGATCTCACCGAACTCCTCAACTTCCACCTCGACGACATTCAAATCTCTCCCTCCGTTGACCACCACGATCCCCTCCTTCCTCCGTCGCCGGACAATCAAAAAATTCGGAAGCGAGACCCTAGGCTCACGTGCACCAATTTCCTCGCGGGTCACGTGCCTTGTGCGTGCCCCGAGCTCGATGCGAAGCTCGATGATGAAGGTTTACCTGGTAAGAAACGTGTGAGGACCGCGCGTGGTTCGGTTGGGATCGTAAGGTGTCAGGTTCCGACGTGTGAGGTTGATATTTCGGAGCTTAAGGGTTATCATAAGAGGCATAGGGTTTGTTTGAGTTGTGCAAGTGCTGCTACTGTTCTTCTTCATGGGGATGAGCCTAATAGATATTGTCAACAGTGTGGAAAGTTTCACATATTATTGGATTTTGATGAAGGTAAACGCAGCTGTAGAAGAAAATTAGAGCGCCATAACAAACGAAGGCGAAGAAAGGCTGCAGATTCTGAAGCTGCTGCTGGTCATGAACTTCAACATGTGACACAGAATGAGGATTTTAGTTACGATGGGGAAGCAGGGAAAGATTGTTCAAATTCTAGTGGTGAGATAAATGAAAAAGAAGTGTCACCGGATCATGAAGATGAACCACTTGCTATTCCGTGCTCAGCTCCTGATACCCAGAATGTTAATAGGGATGACATTCCATCTCTTGTTGCTTCCGGTGAAACACAACTGAGTAGTGGAAAAGATGTTTCCAACATTTCTAATACACCTTCATATTGTGACAATAAGAGTGCTTATTCATCTATGTGCCAAACAGGTCGGATATCTTTTAAGCTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGGCTACGACACCAAATATTTCAATGGTTGGCGAGTATGCCTTTAGAGCTGGAGGGATATATCCGCCCTGGTTGTACAATTCTCACAACTTTTATTGCAATGCCAAAAACTATGTGGATAAACTTACTTGATGACCCCATGCACTATGTGTGTGATCTTGTTGCTCCAGGAAAGATGCTTTCTGGAAGAGGTAGCGCACTAGTTCATTTGGATGACATGATCTTCCGTGTTATGAAAGATGGAACTTCTGTGATGAAAGTCGAGGTAAACATTCAGGCACCAAGGCTTCACTATGTTCATCCCACATACTTCGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTTGTATCTTTTTCTGGAAAGTATCAGAAGTATGAGTATTGTGTTCAATCTCCCCATAACTGGACTGGAGATAATGTTTCTTGTGCTTTCGACAATCAGTTATACAAGATACATATCCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCGAACTTTATTCCTGTACTCATTGGTGATAAAGAAATTTGCATTGAAATGAAGAGGTTACAGCAAAAATTAGATCTGTCTCTCCTTTCCAAACAATTCCAGTCGTCAGCTGTTGGTTCTGTCTGCAGCTCATGTCAGGCTTTTGCACTTAGACATACATCATCATCAGACTTACTTGTAGATATTGCATGGTTGCTTAAGGACCCTACTTCTGAAAATTTTGATCGAGTGATGACAGCTTCACAAATTCAAAGATATTGTTATTTGTTGGATTTTCTAATATGCAATGATTCAACAATCATTTTACACAAAATATTACCCAATTTGATGATCTTGACAGAAAGTATGGAATCAAATGTTGTGGCTAATAGGATGAGTGGTATTGACATGACACATCTGCTGAAATGCATGCATAATGCTAGAGATGTTGTTTATCATAAACAGCACAAAGGTGGTGTAATTGTGCACTCTGAAATGGAAGGCTTTAAAGTTGCTCAGAGCTGCTTCCAAGATTACATGCCATCAGTTGCAATTAACAGTCAGGGTATCATGTCTACATCAGATGCAAGGTTGGGAGTATCAAGAAGTTCAACTGCTAATGACAGAACTGAAAGAATACCACTTTTAAAGAGGGATATTATAATGAACATGGAAGAATTGCCTAGAACATGTAGCCATCGATATCTTCCCCGGGGTTTCATGAGCTCGCGACCCGCTATTTTTGTGATTGCTTCACTTGCTGTTTGTCTTGGGTTATGTGTAGCCGTCCTTCATCCTGGGAAGGTTAGTGAGCTTGCAGTATCTATTAGAAGGTGCTTGTTTAACAATTCATAG 2286 0.4195 MNTNDPSSSPIWDLTELLNFHLDDIQISPSVDHHDPLLPPSPDNQKIRKRDPRLTCTNFLAGHVPCACPELDAKLDDEGLPGKKRVRTARGSVGIVRCQVPTCEVDISELKGYHKRHRVCLSCASAATVLLHGDEPNRYCQQCGKFHILLDFDEGKRSCRRKLERHNKRRRRKAADSEAAAGHELQHVTQNEDFSYDGEAGKDCSNSSGEINEKEVSPDHEDEPLAIPCSAPDTQNVNRDDIPSLVASGETQLSSGKDVSNISNTPSYCDNKSAYSSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPLELEGYIRPGCTILTTFIAMPKTMWINLLDDPMHYVCDLVAPGKMLSGRGSALVHLDDMIFRVMKDGTSVMKVEVNIQAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYQKYEYCVQSPHNWTGDNVSCAFDNQLYKIHIPHTEESLFGPAFIEVENESGLSNFIPVLIGDKEICIEMKRLQQKLDLSLLSKQFQSSAVGSVCSSCQAFALRHTSSSDLLVDIAWLLKDPTSENFDRVMTASQIQRYCYLLDFLICNDSTIILHKILPNLMILTESMESNVVANRMSGIDMTHLLKCMHNARDVVYHKQHKGGVIVHSEMEGFKVAQSCFQDYMPSVAINSQGIMSTSDARLGVSRSSTANDRTERIPLLKRDIIMNMEELPRTCSHRYLPRGFMSSRPAIFVIASLAVCLGLCVAVLHPGKVSELAVSIRRCLFNNS* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0444 761 MobiDBLite consensus disorder prediction 164 224 - -
Lan16g0444 761 ProSiteProfiles Zinc finger SBP-type profile. 95 173 IPR004333 GO:0003677
Lan16g0444 761 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 758 IPR044817 GO:0003677
Lan16g0444 761 Gene3D - 94 160 IPR036893 GO:0003677|GO:0005634
Lan16g0444 761 Pfam SBP domain 98 173 IPR004333 GO:0003677
Lan16g0444 761 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 7 758 - -
Lan16g0444 761 SUPERFAMILY SBT domain 96 176 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0444 Lan-Chr16 4385991 4393196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0444 3 754 SBP-box Gene Family AT5G18830 46.701 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan16g0444 SBP 5.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0444 - - aprc:113863838 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0652 19 12345667 12352319 Lan16g0444 16 4385991 4393196 LSH