Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0441 ATGAACGATGATGGAGAACCAAAACCATCACCCAGCAATGACAACCATCACAGCTCAGAAAAGAAACAACAACTAAAAAAGGAGAACTATTCTGTAAGAGGAAGAAGACCAAGAATTGGATTTTCTGAAACATTTTCAAACATTGGTATATTAGATTTGGGAGGCTTAGATATTGAATTGCAGCACCAATCTGAGCTTAACTCTAGTCCTAGAACTCTAGAGCCAGGAACCCCTTCTTCAAGGGCCAGTACCTCTGATTCTGAGGGTCAGCATGATTTGAGAGGCACTAACAATAATCAGTGGCGTCAAGGTTTCTTTAAATTACTGAAGAAAGGATCACAAATGCCCTTTCATACTTTTCATCCACTTAAAAATGTTCCAAAGTTAACAAGGAGAAAGAGTAAAAGAATAAGGGAGGACCTGATTCCTTCTCTTAGTTCTCCTGCTCTCAAATCATCTTTGGATAGTGAGTTTTGCTGCTTTAAATCTTCCTGGAAAAATTTCACCCTCTCTGAGATTCAGGCTGCAACCAATGACTTTAGCCATGACAATTTGATTGGAGAGGGAGGCTATGCTGAGGTTTACTTAGGCAAATTGGAAGATGGAAACTTTGTTGCCATTAAAAGGCTCACAAGAGGGAGCCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATAATTGTGCATGTGGACCACCCAAATATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGTTCTTCAGTTGTCTCCACATGGCAGCCTATCATCCATACTTTATGGACCTAGAGAAAAACTGAATTGGAGCCTAAGGTTTAAGATTATTATGGGGACTGCTGAGGGACTCCAATATCTGCATGAGGGATGTCAAAGAAGGATTATTCACAAAGATATCAAGGCTTCTAATATACTCCTCTCAGAGAATTTTGAGCCTCAGATATCTGATTTTGGGCTTTCAAAATGGTTGCCTGACCAATGGACTCACCATACTGTCTCCAAAGTGGAAGGCACCTTTGGCTATATTCCACCTGAATTCTTCATGCATGGTATAGTTGATGAAAAAACTGATGTATATGCTTATGGTGTGCTATTATTGGAGCTTATTACTGGAAGACAAGCTTTGGATAGTTCACAGAAAAGTCTTGTGATGTGGGCCAAACCTTTGCTATCTGCAAACAACATCAAAGAGCTTGTTGATCCAACTTTGGCTAATGCTTATGATGAAGTGCAGATGAAACATGTAATCTTAACAGCTTCTCTGTGTATAGAGCAGACTTCGGTTCATCGACCGTACATGAACCAGGTATTAAAGATACTAAGAGGCGAAGAAGAGAGTTTGAAGATGATGAAGGAACGCCAGAAGTCGAAACTTCAAAGGACATACTCAGTAGAATTGAATGATGCAGAAGATTACAACTCAACCAAGTTTTTGAGTGATAGGGATAGATTCATGGAGACTATTCTAGGTTCTAACTCTATTAAAAAAGAAAGCAATGAAAGCTAG 1521 0.3951 MNDDGEPKPSPSNDNHHSSEKKQQLKKENYSVRGRRPRIGFSETFSNIGILDLGGLDIELQHQSELNSSPRTLEPGTPSSRASTSDSEGQHDLRGTNNNQWRQGFFKLLKKGSQMPFHTFHPLKNVPKLTRRKSKRIREDLIPSLSSPALKSSLDSEFCCFKSSWKNFTLSEIQAATNDFSHDNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGSQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRFKIIMGTAEGLQYLHEGCQRRIIHKDIKASNILLSENFEPQISDFGLSKWLPDQWTHHTVSKVEGTFGYIPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSANNIKELVDPTLANAYDEVQMKHVILTASLCIEQTSVHRPYMNQVLKILRGEEESLKMMKERQKSKLQRTYSVELNDAEDYNSTKFLSDRDRFMETILGSNSIKKESNES* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0441 506 PANTHER OS08G0249100 PROTEIN 65 483 - -
Lan16g0441 506 SMART serkin_6 180 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0441 506 MobiDBLite consensus disorder prediction 1 35 - -
Lan16g0441 506 Gene3D Phosphorylase Kinase; domain 1 144 254 - -
Lan16g0441 506 ProSitePatterns Protein kinases ATP-binding region signature. 186 208 IPR017441 GO:0005524
Lan16g0441 506 Gene3D Transferase(Phosphotransferase) domain 1 257 474 - -
Lan16g0441 506 Pfam Protein tyrosine and serine/threonine kinase 183 443 IPR001245 GO:0004672|GO:0006468
Lan16g0441 506 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 65 483 - -
Lan16g0441 506 ProSiteProfiles Protein kinase domain profile. 180 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0441 506 MobiDBLite consensus disorder prediction 66 98 - -
Lan16g0441 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672|GO:0006468
Lan16g0441 506 SUPERFAMILY Protein kinase-like (PK-like) 161 445 IPR011009 -
Lan16g0441 506 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0441 Lan-Chr16 4361983 4366534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0441 151 449 Receptor kinase-like Gene Family AT1G53420 40.065 1.38e-69 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lan16g0441 PK_Tyr_Ser-Thr 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0441 - - lja:Lj6g3v1915960.1 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0369 4 5947590 5951290 Lan16g0441 16 4361983 4366534 LSH
Lan19g0653 19 12354392 12359612 Lan16g0441 16 4361983 4366534 LSH