Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0416 ATGGAACGCATCATCGGCGGCAAGTACAAGCTTGGCCGCAAGATCGGAAGCGGTTCCTTCGGTGAAATCTACCTCGCTACTCATATGGATACATTCGAGATCGTTGCTATTAAGATCGAGAATGGTAAAACAAAGCATCCACAATTGCTTTACGAGGCCAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCAAGCATAAAATGGTTTGGTGTAGATGCGGAGGACAATGCGCTTGTTATCGATTTGCTGGGTCCCAGCCTTGAGGATCTTTTTGTCTACTGTGGAAGAAAGTTCTCATTAAAGACAGTGTTGATGTTGGCTGATCAAATGATGAATAGAATAGAATATGTGCACTCGAAAGGATTCCTACACAGAGATATAAAACCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTGGTTTATATCATTGACTTTGGGCTTGCAAAACGATATCGTGACTCCTCAACCAATCGTCACATCCCTTATAGAGAGAATAAAAACTTAACAGGGACTGCACGTTATGCAAGTTGCAATACTCACCTTGGAATCGAGCAAAGCCGGCGGGATGATTTGGAGTCATTGGGATATGTGCTTTTGTACTTCCTAAGAGGAAGCCTTCCTTGGCAAGGGTTGAAGGCTGCTACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAAGTATCAACTCCGATTGAGGTGTTATGCAAATCTCACCCTGTAGAGTTCACTTCATACTTTCATTACTGTCATTCTCTGACCTTTGATCAGCGGCCTGATTATGGATTCTTGAAGCGCTTATTCCGGGAACTATTTGCTCGAGAAGGTTATGAATTTGATTATGTATTTGATTGGACTATCTTAAAGTATCAGCAGTCGCAAAAGAACAGAGTCCAGCCCCGCATATCTCCGGTCCCTGGAGCTAGCAACAGTCGTGCAATGCCAATGGATCTTGACAACCGTCAAGGGGACGCCTCAGAGCGCATCAAGTCAGGCAATGCTACTGGTTCTGGTGTTAAAATTCAGTTTAAATCATCATTAAGTAAAAATTTGGGTTCTGAAAATCCTATTGGCAAGAATATTTTTGGTGAAGCGGATGTACCCTCTACTTCATTTTCTCTTGCTGGTACCTCAAGAAGGAACCCCTTGAAGCCTGCCTTGTCGACTGAAGCTTCCAACCATGTACATGGGCAAGGAAGTCCCTTCAAGTAG 1227 0.4319 MERIIGGKYKLGRKIGSGSFGEIYLATHMDTFEIVAIKIENGKTKHPQLLYEAKLYNILQGGSGIPSIKWFGVDAEDNALVIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMNRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYIIDFGLAKRYRDSSTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFTSYFHYCHSLTFDQRPDYGFLKRLFRELFAREGYEFDYVFDWTILKYQQSQKNRVQPRISPVPGASNSRAMPMDLDNRQGDASERIKSGNATGSGVKIQFKSSLSKNLGSENPIGKNIFGEADVPSTSFSLAGTSRRNPLKPALSTEASNHVHGQGSPFK* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0416 408 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lan16g0416 408 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0416 408 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Lan16g0416 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lan16g0416 408 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0416 408 MobiDBLite consensus disorder prediction 376 408 - -
Lan16g0416 408 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0416 408 MobiDBLite consensus disorder prediction 376 401 - -
Lan16g0416 408 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Lan16g0416 408 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 398 - -
Lan16g0416 408 CDD STKc_CK1_delta_epsilon 8 282 - -
Lan16g0416 408 PANTHER CASEIN KINASE-RELATED 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0416 Lan-Chr16 4063691 4068173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0416 9 230 EF-hand Containing Proteins AT3G20410 30.043 1.12e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lan16g0416 Pkinase 1.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0416 K08960 - gmx:100805890 737.258