Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0406 ATGGCCAATTTCACATCTTCATCACTTTCACACATTCCACCCTCTTCTTCAGCAGCTTTTGATGATGACACTTATGAAGACTCCTGCAGTATATGCCTTGAACCTTTCAATACCAATGACCCACCCACTATTACCTGTTGCAAACACGAATATCATCTGCATTGTATCCTTGAATGGTCACAGAGAAGCAAAGAGTGTCCAATATGTTCTCAATCGCTTGGTTTGGAAGACCCTGCCAGCCAAGAGCTTCTGGATGCAGTGGAGGCTGAAAAACGCTTAACATTTAGAAACAGTCACTCATATCCATTCACTAGCTCCCATGATGATTCTTCCTCAGATGACTCTGGTTTTGACGAACGAATTATGCAACACCTAATTGCCGCTGCTGAAAGTAGAGCTCGTTTTGTTCATAGACGAGAAAGGCAGAGATTATCTGGAGTAGGCCCTTCAGAGGTTGCGACAAATACTACTCCCCACAGTGATGTTCCTTTCAGACCCAGAGTTTTCTATAGCCACACACCGTCAGAGAGTGCGAGGAGACTAAACACTTCTGAGATGTTCTCTGTCCCTGAGTCATTCAAATCCAAATTTTCTGCTGCTTCAGCCAGATATAAGGAATCCATTTCAAAAAGTACCCGGGACCTTAAGGAGAAGTTACTTGCTCGCAATGCATCAGTAAAAGAACTGAGTAAAGGTGTTCAACGTGAGATGAATGCAGGCATTGCTAGTGTTACACGGATGATCGAACGTCTTGATCTTACCTCAAAATGGTCCACTTCTCCTCTTAGTCCTGTCCATACTGAGGGAACTTCAGGGCTTCCTGTAAAAGGGAAGTCTATTGAAGAGAATGGCATTGGACATGGTCCATGTGAAGAGAGTGGAGATCTGGTTCGTGATATTAATTCTGATGCCCCCTCCCTTGTTTCTCGCATGGTTGTTAGTCGTGCAGAAAGTCCGCCAGGTGTTCAGAATGGACATGATGCTGTGAAGACATAA 996 0.4428 MANFTSSSLSHIPPSSSAAFDDDTYEDSCSICLEPFNTNDPPTITCCKHEYHLHCILEWSQRSKECPICSQSLGLEDPASQELLDAVEAEKRLTFRNSHSYPFTSSHDDSSSDDSGFDERIMQHLIAAAESRARFVHRRERQRLSGVGPSEVATNTTPHSDVPFRPRVFYSHTPSESARRLNTSEMFSVPESFKSKFSAASARYKESISKSTRDLKEKLLARNASVKELSKGVQREMNAGIASVTRMIERLDLTSKWSTSPLSPVHTEGTSGLPVKGKSIEENGIGHGPCEESGDLVRDINSDAPSLVSRMVVSRAESPPGVQNGHDAVKT* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0406 331 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 311 - -
Lan16g0406 331 Pfam Ring finger domain 27 69 IPR001841 -
Lan16g0406 331 SUPERFAMILY RING/U-box 23 75 - -
Lan16g0406 331 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
Lan16g0406 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 311 - -
Lan16g0406 331 SMART ring_2 29 69 IPR001841 -
Lan16g0406 331 MobiDBLite consensus disorder prediction 1 21 - -
Lan16g0406 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 83 IPR013083 -
Lan16g0406 331 MobiDBLite consensus disorder prediction 260 298 - -
Lan16g0406 331 CDD RING-H2 29 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0406 Lan-Chr16 3947667 3950856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0406 23 77 C3H Transcription Factor Family AT4G00335 45.455 4.67e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0406 K19043 - gmx:100785684 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0398 4 6195710 6198915 Lan16g0406 16 3947667 3950856 LSH