Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0403 ATGAGTTGTTGCTTACCATGCTGCAAATCTGAAGTTGAATCACCCTCTTACACAAAAGTAGAAAGAAAAACCAGAAAAGTTTCAGCAGGAAGGCAAACATTCAAATCAATAGCTGCTGCTGTGTCAATTAAGACCGGTAGCAGCAGGCATAGACATATAACAGCAGAGATACTAAAATATGGAGCTGCACAAAATGATGTAAAAGTATTCACATATGAAGAACTTGCTGCTGCAACAGGCAACTTTAGCACTGATTGCCGTATCGGAGAAGGTGGATTTGGGAATGTCTACAAAGGATACATAAAAAGCACTAATCAAACTGTAGCTGTGAAGCAACTGAATAGAGAAGGAACCCAAGGAACAAGAGAATTTTTCGCCGAGGTTTTGATGTTAAGCTTGGTGAAACATCCTAACCTTGTCAAGCTCCTTGGTTATTGTGCAGAAGAAGATAATAGAATTCTAGTTTATGAATGCATGGCTAATGGAAGTTTGGAAGATCACCTTCTAGACATGGGTAAAGATAAGGAGCCATTGGATTGGCAGACAAGGATGAAAATAGCTGAGGGAGCAGTTAGAGGACTTGAATACTTGCATAATGGTGCAGATCCACCAGTGATATTCCGTGATTTCAAATCGTCTAATATACTGTTAGATGAAAATTTCAATGCAAAGCTATCAGATTTTGGACTTGCTAAGTTGGGTCCAATTGAAGGCAAGAATCCTGTCTCAACTAGGGTGATGGGAACCTATGGCTATTGTGCACCTGAGTATGCTTCTTCAGGTCAACTATCCACAAAAATAGATATATATAGTTTTGGTGTAGTGCTTTTGGAGATAATCACTGGTAGGAGGGTAATAGACACAGCAAGATGTGCAGAGGAGCAAAACTTGATTGATTGGGCAACACCATTGTTTAAGGACAGAAAGAAGTTCACTCAAATGGCTGATCCTTTGCTAGAAGGTAATTTCCCAGTGAAGGGTCTATTTCAAGCTCTAGCAGTGGCAGCAATGTGCCTACAAGAGGAACCGGATATGCGGCCTCAAGTGGATGATGTTGTAACAGCTCTTATGCATCTAACAACACAAAAAAATGAAGAAAAAGACATTGTTAGTGATTCTCTGAAAAGTGAAGGACATGTTGAGTCTTTTAGAGCTACACCTTCATTTGAAGAGCCAATGGATTAG 1185 0.3992 MSCCLPCCKSEVESPSYTKVERKTRKVSAGRQTFKSIAAAVSIKTGSSRHRHITAEILKYGAAQNDVKVFTYEELAAATGNFSTDCRIGEGGFGNVYKGYIKSTNQTVAVKQLNREGTQGTREFFAEVLMLSLVKHPNLVKLLGYCAEEDNRILVYECMANGSLEDHLLDMGKDKEPLDWQTRMKIAEGAVRGLEYLHNGADPPVIFRDFKSSNILLDENFNAKLSDFGLAKLGPIEGKNPVSTRVMGTYGYCAPEYASSGQLSTKIDIYSFGVVLLEIITGRRVIDTARCAEEQNLIDWATPLFKDRKKFTQMADPLLEGNFPVKGLFQALAVAAMCLQEEPDMRPQVDDVVTALMHLTTQKNEEKDIVSDSLKSEGHVESFRATPSFEEPMD* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0403 394 Gene3D Phosphorylase Kinase; domain 1 66 158 - -
Lan16g0403 394 SUPERFAMILY Protein kinase-like (PK-like) 66 355 IPR011009 -
Lan16g0403 394 ProSitePatterns Protein kinases ATP-binding region signature. 88 111 IPR017441 GO:0005524
Lan16g0403 394 Gene3D Transferase(Phosphotransferase) domain 1 159 381 - -
Lan16g0403 394 Pfam Protein kinase domain 85 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0403 394 PANTHER RECEPTOR SERINE/THREONINE KINASE 3 388 - -
Lan16g0403 394 PANTHER OS07G0668900 PROTEIN 3 388 - -
Lan16g0403 394 CDD STKc_IRAK 88 359 - -
Lan16g0403 394 MobiDBLite consensus disorder prediction 367 394 - -
Lan16g0403 394 ProSiteProfiles Protein kinase domain profile. 82 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0403 Lan-Chr16 3913303 3916502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0403 68 361 Glycoside Hydrolase AT3G07070 65.306 2.02e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lan16g0403 Pkinase 7.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0403 - - gmx:100305361 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0400 4 6214358 6217336 Lan16g0403 16 3913303 3916502 LSH