Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0400 ATGATGCAACCAGGAGGACCCGGAGGAATTGCTCCACCAACCATTCCTCAGCAACCTTACGTCATGTTACCACCTCAGCCGCAGCCTCAGCCCATCTGGCAACAGCCACCGCCGCAGTCTCTTCCGACGCCGCAACAACAGCCTACAAGCGCCGATGAGGTCCGTACCTTATGGATCGGTGATTTGCAGTACTGGATGGATGAAAATTATCTCTATCAATGCTTTGCTCACACCGGTGAGGTGGCCTCTGTGAAAGTCATTCGTAATAAACTAACTAATCAATCTGAAGGCTATGGGTTTATTGAGTTTAATAGTCGTGCTGGTGCTGAGAGAGTACTTCAATCTTACAATGGATCTATTATGCCTAATGGTGGGCAGCCCTTTAGGTTGAACTGGGCATCATTCAGTGCGGGTGAGAGGCGTCATGATGATAGTCCTGATTACACCATATTTGTTGGTGACTTGGCTGCAGATGTGACCGACTATCTCCTAACAGAGACATTTAGGTCTCGTTTTAATTCCGTGAAGGGTGCAAAAGTTGTGATTGATAGGCTCACTGCCCGGAGTAAGGGTTATGGTTTTGTGAGGTTTGCAGATGAGAATGAGCAAGTGAGGGCTCTGACTGAGATGCAAGGTGTTGTTTGTTCAACAAGGCCCATGCGGCTTGGCCCAGCTACGAATAAAAATGTGGGAACACCCCAAAAAGCTTCATATCAGAATCCTCAAGGCCAAGGCTCCCAGAGCGAGAGTGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGTCACTGATGATCATCTGAGACAAGTTTTTGGCCAGTACGGCGAGTTGGTTCATGTGAAGATTCCATCAGGCAAACGATGTGGGTTTGTCCAATTTGCTGACAGGAGCTCTGCTGAGGAGGCACTACGGGTTTTAAATGGAGTGCCATTGGGTGGACAAAATGTTCGCCTTTCATGGGGCCGTAGTCCTTCAAACAAACAAGCCCAGCCAGATGCAAACCAGTGGAATGGTGGTGGTGGTGGTGGCAGTGGTGGATATTACGGATATCCTCAGCAGGGTTATGAAAATTATGGTTATGCTGCTCCTGCTCCTGCTCCTGCTCAGGATCCCAACTTGTATGGGAGTTATCCAGCAGGGTATGCCAATTACCAACCACCACAGCAACAGCAGCAATTAGGATATAATTGA 1203 0.478 MMQPGGPGGIAPPTIPQQPYVMLPPQPQPQPIWQQPPPQSLPTPQQQPTSADEVRTLWIGDLQYWMDENYLYQCFAHTGEVASVKVIRNKLTNQSEGYGFIEFNSRAGAERVLQSYNGSIMPNGGQPFRLNWASFSAGERRHDDSPDYTIFVGDLAADVTDYLLTETFRSRFNSVKGAKVVIDRLTARSKGYGFVRFADENEQVRALTEMQGVVCSTRPMRLGPATNKNVGTPQKASYQNPQGQGSQSESDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGVPLGGQNVRLSWGRSPSNKQAQPDANQWNGGGGGGSGGYYGYPQQGYENYGYAAPAPAPAQDPNLYGSYPAGYANYQPPQQQQQLGYN* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0400 400 CDD RRM2_SECp43_like 147 226 - -
Lan16g0400 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 135 IPR000504 GO:0003723
Lan16g0400 400 SUPERFAMILY RNA-binding domain, RBD 242 355 IPR035979 GO:0003676
Lan16g0400 400 MobiDBLite consensus disorder prediction 322 341 - -
Lan16g0400 400 MobiDBLite consensus disorder prediction 1 52 - -
Lan16g0400 400 MobiDBLite consensus disorder prediction 363 400 - -
Lan16g0400 400 Gene3D - 17 144 IPR012677 -
Lan16g0400 400 Gene3D - 233 365 IPR012677 -
Lan16g0400 400 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 25 397 - -
Lan16g0400 400 SUPERFAMILY RNA-binding domain, RBD 54 228 IPR035979 GO:0003676
Lan16g0400 400 MobiDBLite consensus disorder prediction 386 400 - -
Lan16g0400 400 Gene3D - 147 223 IPR012677 -
Lan16g0400 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 227 IPR000504 GO:0003723
Lan16g0400 400 MobiDBLite consensus disorder prediction 9 44 - -
Lan16g0400 400 CDD RRM3_NGR1_NAM8_like 254 325 - -
Lan16g0400 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 327 IPR000504 GO:0003723
Lan16g0400 400 SMART rrm1_1 56 131 IPR000504 GO:0003723
Lan16g0400 400 SMART rrm1_1 149 223 IPR000504 GO:0003723
Lan16g0400 400 SMART rrm1_1 256 323 IPR000504 GO:0003723
Lan16g0400 400 CDD RRM1_SECp43_like 56 136 - -
Lan16g0400 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 214 IPR000504 GO:0003723
Lan16g0400 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 320 IPR000504 GO:0003723
Lan16g0400 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 122 IPR000504 GO:0003723
Lan16g0400 400 MobiDBLite consensus disorder prediction 322 344 - -
Lan16g0400 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 397 - -
Lan16g0400 400 MobiDBLite consensus disorder prediction 218 262 - -
Lan16g0400 400 MobiDBLite consensus disorder prediction 227 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0400 Lan-Chr16 3894011 3899157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0400 57 337 Eukaryotic Initiation Factors Gene Family AT1G22760 26.460 3.49e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0400 - - gmx:100801562 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0406 4 6250306 6254548 Lan16g0400 16 3894011 3899157 LSH
Lan19g0670 19 12667516 12671607 Lan16g0400 16 3894011 3899157 LSH
Lan12g1314 12 18824492 18827764 Lan16g0400 16 3894011 3899157 PCT