Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0393 ATGGGTTGTCATGGTAGCAAAGAGACAAAAATCACCGAACAATTTTCTGGGCATGGATCAAATTCAAATCCAGCTAGCACCAGAAATCACCATCACACTGTTCAACCTTCTACCACACAAGCTCAAACATCAGCAGCAGCAGCATCAGAAGCAGCACTACACAATAACCAGAACCAGAACCAGAAGCAGCAACAAGTGCCAATAACAAAGCCTTATTCACAAAACACAAGGCCAGTGTTGCAGAAACAAGAGCCAACTATTCTAGGAAAACCCCTTGAAGATATCAAGAAGTACTATACCCTTGGCAAAGAATTGGGTAGAGGACAATTTGGTGTTACTTATTTATGCACTGAGAATTCAACTGGTTATACTTTTGCCTGCAAATCAATTTTGAAGAGGAAGCTTGTGTCTAAAGCTGATAAAGAGGATATCAAGAGGGAGATTCAGATTATGCAGCATTTGTCTGGCCAACCAAATATTGTGGAGTTTAAGGGTGCTTATGAGGACCGGTATTCGGTGCATCTTGTGATGGAGCTTTGTGCTGGTGGAGAGCTTTTTGATAGGATAATTGCTCAGGGGCACTATTCTGAGAGAGCCGCGGCATCAATGTGTAGAGCCATTGTTAATGTTGTCCACATTTGTCACTTCATGGGTGTGTTGCACCGCGATCTAAAGCCTGAGAATTTCTTGCTTTCTAGCAAGGATGAGGATGCAACCCTCAAGGCAACTGATTTTGGACTATCTGTGTTTATTGAAGAAGGGAAGGTTTACCGTGATATGGTAGGCAGTGCTTACTATGTTCCTCCCGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATGTTTGGAGTGCAGGTATCATATTGTATATTCTCCTGAGTGGCGTGCCTCCTTTTTGGGCCGAAACTGAAAAGGGAATATTTAATGCCATATTAGAAGGTGAACTTGACTTCGAAAGCCAACCATGGCCATCAATATCAAACAGCGCTAAAGATCTAGTTAGGAAGATGTTGACACAGGATCCGAAGAAGCGGATTACTTCTGCTGAAGTCCTTGAACACCCATGGATACGAGAAGGCGGAGAGGCATCTGATAAACCTATTGATAGTGCAGTTCTATCTAGAATGAAACAGTTCAGGGCAATGAATAAGCTCAAGAAGATTGCAATGAAGGTTATGGCTGAAAATTTATCCGAAGAAGAGATTAAAGGTCTCAAAGCAATGTTTGCAAACATGGACACTGACAATAGCGGCACTATCACCTACGAAGAACTGAAGACAGGCTTGGCTCGAATTGGATCAAAATTGTCTGAGGCTGAAGTGAAGCAACTCATGGAAGCTGCTGATGTTGATGGGAATGGATCAATTGACTACATTGAATTCATCTCAGCTACAATGCATAGGCACAGGCTTGAACGAGATGAACACCTTTACAAAGCATTCCAGTATTTTGATGAGGATAGCAGTGGGTATATTACTAGAGATGAATTGGAAATTGCTATGACAAAGTATGGAATGGGTGATGAAGCTACCATAAAGGAAATAATTTCTGAGGTGGATACAGATAATGATGGACGAATAAATTACGAGGAATTCTGTGTAATGATGAGAAGTGGAACAACACCAGGGACCACTACTTTAAATCTACTAGAATGGAATCTGTGA 1665 0.4168 MGCHGSKETKITEQFSGHGSNSNPASTRNHHHTVQPSTTQAQTSAAAASEAALHNNQNQNQKQQQVPITKPYSQNTRPVLQKQEPTILGKPLEDIKKYYTLGKELGRGQFGVTYLCTENSTGYTFACKSILKRKLVSKADKEDIKREIQIMQHLSGQPNIVEFKGAYEDRYSVHLVMELCAGGELFDRIIAQGHYSERAAASMCRAIVNVVHICHFMGVLHRDLKPENFLLSSKDEDATLKATDFGLSVFIEEGKVYRDMVGSAYYVPPEVLRRSYGKEIDVWSAGIILYILLSGVPPFWAETEKGIFNAILEGELDFESQPWPSISNSAKDLVRKMLTQDPKKRITSAEVLEHPWIREGGEASDKPIDSAVLSRMKQFRAMNKLKKIAMKVMAENLSEEEIKGLKAMFANMDTDNSGTITYEELKTGLARIGSKLSEAEVKQLMEAADVDGNGSIDYIEFISATMHRHRLERDEHLYKAFQYFDEDSSGYITRDELEIAMTKYGMGDEATIKEIISEVDTDNDGRINYEEFCVMMRSGTTPGTTTLNLLEWNL* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0393 554 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Lan16g0393 554 ProSitePatterns EF-hand calcium-binding domain. 520 532 IPR018247 -
Lan16g0393 554 SMART serkin_6 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0393 554 SUPERFAMILY EF-hand 396 536 IPR011992 -
Lan16g0393 554 ProSiteProfiles EF-hand calcium-binding domain profile. 472 506 IPR002048 GO:0005509
Lan16g0393 554 PANTHER SERINE/THREONINE-PROTEIN KINASE 55 541 - -
Lan16g0393 554 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Lan16g0393 554 Pfam Protein kinase domain 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0393 554 SUPERFAMILY Protein kinase-like (PK-like) 97 365 IPR011009 -
Lan16g0393 554 Gene3D Transferase(Phosphotransferase) domain 1 185 364 - -
Lan16g0393 554 ProSiteProfiles Protein kinase domain profile. 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0393 554 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Lan16g0393 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Lan16g0393 554 Gene3D Phosphorylase Kinase; domain 1 101 184 - -
Lan16g0393 554 ProSitePatterns Protein kinases ATP-binding region signature. 105 132 IPR017441 GO:0005524
Lan16g0393 554 MobiDBLite consensus disorder prediction 1 66 - -
Lan16g0393 554 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Lan16g0393 554 Pfam EF-hand domain pair 475 537 IPR002048 GO:0005509
Lan16g0393 554 Pfam EF-hand domain pair 405 465 IPR002048 GO:0005509
Lan16g0393 554 Gene3D - 365 539 - -
Lan16g0393 554 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 55 541 - -
Lan16g0393 554 ProSiteProfiles EF-hand calcium-binding domain profile. 507 542 IPR002048 GO:0005509
Lan16g0393 554 CDD STKc_CAMK 99 356 - -
Lan16g0393 554 SMART efh_1 440 468 IPR002048 GO:0005509
Lan16g0393 554 SMART efh_1 511 539 IPR002048 GO:0005509
Lan16g0393 554 SMART efh_1 476 504 IPR002048 GO:0005509
Lan16g0393 554 SMART efh_1 404 432 IPR002048 GO:0005509
Lan16g0393 554 MobiDBLite consensus disorder prediction 9 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0393 Lan-Chr16 3835364 3839872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0393 1 541 EF-hand Containing Proteins AT4G04720 73.752 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan16g0393 Pkinase 1.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0393 K13412 - gmx:100812843 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0393 16 3835364 3839872 Lan16g0393 16 3835364 3839872 ECH