Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0379 ATGGATTGGATTAGGGGAAATTTACTCGGCCGGGGCTCCACAGCTTCCGTGTATAAGGCCGAGTCTCGGTGTAATGGTAAGGTATTTGCAATAAAGTCCGTGGAACTCGACCGTTCCGAATTCTTAAAGAAGGAGAAGGAGATTCTTTCAACACTTAATTGTCCTCAAATTGTGTCATACCAAGGTTTTCATGTTACATTCGAGAACGGTGCAAACTACTACAACTTGTTCATGGAGTATGCGCCACGTGGCACTCTCTCAGACGCCGTTTGCAATGGGAAGGTGATAGAAGAAGCTGTGGTGAGATCCTACACGCGCCAAATCTTGGAAGGGTTGAACTACCTTCATGCAAATGGGATAGTGCATTGCGACGTGAAGGGACAGAACGTGTTGCTCACGGACCAAGGTGCGAAGATTGCTGACTTTGGTTGTGCTAAGAGGATAGGTGATTTGGCTGCAGCCATGGCGGGGACGCCGGCGTTCATGGCACCTGAGGTGGCGCGTGCGGAAGAACAGGGGTTCCCTGCTGACGTGTGGGCTTTTGGGTGCACTGTTTTGGAGATGATCACTGGGAAGCCGCCGTGGCAAGGTGTTTCTGACCCGGCTGCGGTGGTTTATCGGGTTGGATTCTCCGGCAAGGCGCCGGAGATTCCAGGTTTTGTGTGTGAAGAAGGGAAAGATTTTTTGAGCAAGTGCTTTAAAAATGACCCTTTTGAAAGGTGGACAGTGTGTGAGCTTCTTAATCATGGATTTGTAAGAGGAACAAATTTGTTGTGTAATAGAATTGCATTTGCATGTGATTTGGTGACTCCAACAAGTGTGTTGGAAGGAGGGTGCTTTTCGGACTCAAAGACCAATCAGGATGTGACACATGTTGGTTGTTCCTGGGATTCTTCAAGTCCCAGGGACAGAATTCATATGTTGTGTACTTCTGAGCCTTTTTGGGATTGGGCTGATGAAGAAGAATTGGAATGGGTCACAGTGAGAAGCAATGACATTGAGAAAGAAGGGTTTGAGTTAGAGGGAATGTCATTGGTGTCTATTGAGAAAATGGAAGATTATGGATCAAACATTGTTTATGGGATGGTGTCATTGATTATTGTTACCTTAGCATCTCTGACAGAGAATTGTTATTAG 1137 0.4644 MDWIRGNLLGRGSTASVYKAESRCNGKVFAIKSVELDRSEFLKKEKEILSTLNCPQIVSYQGFHVTFENGANYYNLFMEYAPRGTLSDAVCNGKVIEEAVVRSYTRQILEGLNYLHANGIVHCDVKGQNVLLTDQGAKIADFGCAKRIGDLAAAMAGTPAFMAPEVARAEEQGFPADVWAFGCTVLEMITGKPPWQGVSDPAAVVYRVGFSGKAPEIPGFVCEEGKDFLSKCFKNDPFERWTVCELLNHGFVRGTNLLCNRIAFACDLVTPTSVLEGGCFSDSKTNQDVTHVGCSWDSSSPRDRIHMLCTSEPFWDWADEEELEWVTVRSNDIEKEGFELEGMSLVSIEKMEDYGSNIVYGMVSLIIVTLASLTENCY* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0379 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Lan16g0379 378 Pfam Protein kinase domain 6 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0379 378 PANTHER MAP KINASE KINASE KINASE 1 346 - -
Lan16g0379 378 SUPERFAMILY Protein kinase-like (PK-like) 2 287 IPR011009 -
Lan16g0379 378 Gene3D Transferase(Phosphotransferase) domain 1 2 269 - -
Lan16g0379 378 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 346 - -
Lan16g0379 378 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0379 378 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Lan16g0379 378 CDD STKc_MAPKKK 2 252 - -
Lan16g0379 378 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0379 Lan-Chr16 3725804 3727025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0379 1 252 MAP Kinase Kinase Kinase AT2G32510 53.668 1.06e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lan16g0379 Pkinase 6.4e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0379 K20716 - gmx:100802174 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0379 16 3725804 3727025 Lan16g0379 16 3725804 3727025 ECH
Lan8g1556 8 22590667 22591995 Lan16g0379 16 3725804 3727025 ECH
Lan19g0688 19 12938676 12940198 Lan16g0379 16 3725804 3727025 LSH