Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0372 ATGAGTCAACTCGGTCGAAGACAGAGGGAGACACCAACCACGATTCTGAGTTTGTTAACGGATCAAATGGACGGCGTTGATGGAGGAACTCGAAGAAGACGTAGTTTGAAGGAACGGCTAGGATTCATCGGCATGGGTTGTTGTGGGGCCACATGGGTTTTCCGTTCAACAACTCTAACGGCCACTAACGGTAGAGAACAACAACCCCAACAAGAAGAAGAAGAACATAACCAGCACGAGTTTCTGGAACTGGGTTCGGGTCAAGATCCGAACTTGTCACAACCCGAATGTCTGGGTCCGATTGCGTCGGGTTCTTCGTCGGGAATGAACCTTGCGGCGGCGTTGGCGGCGGAGAGGGAGCTGAGGGGACCGAATGAAGTGGAGAGGGTGTCGCTGATGAGGCTACTGGAAGAGACGGAGGAGGTGGTGGTGGTAGAGGAGAAAGGAGTGACAACTGCGATGGGGAATGATTCAGTGTGTTGCGTGTGCATGGGAAGGAAGAAAGGCGCAGCTTTCATTCCATGTGGACACACTTTTTGCAGAGTGTGTTCCAGGGAATTGTGGCTCAATCGAGGCTCTTGCCCCCTTTGCAATCGTTCTATTCTCGAGATTCTCGACATTTTCTAA 627 0.5167 MSQLGRRQRETPTTILSLLTDQMDGVDGGTRRRRSLKERLGFIGMGCCGATWVFRSTTLTATNGREQQPQQEEEEHNQHEFLELGSGQDPNLSQPECLGPIASGSSSGMNLAAALAAERELRGPNEVERVSLMRLLEETEEVVVVEEKGVTTAMGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0372 208 CDD RING-HC 160 197 - -
Lan16g0372 208 Pfam Zinc finger, C3HC4 type (RING finger) 157 202 - -
Lan16g0372 208 SUPERFAMILY RING/U-box 159 205 - -
Lan16g0372 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 207 IPR013083 -
Lan16g0372 208 PANTHER OS01G0917900 PROTEIN 13 208 - -
Lan16g0372 208 SMART ring_2 160 197 IPR001841 -
Lan16g0372 208 ProSiteProfiles Zinc finger RING-type profile. 160 198 IPR001841 -
Lan16g0372 208 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0372 Lan-Chr16 3587211 3588408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0372 15 208 C3H Transcription Factor Family AT4G22250 54.717 4.53e-59 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0372 - - gmx:100804292 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0434 4 6509986 6510806 Lan16g0372 16 3587211 3588408 LSH