Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0352 ATGACTGTAATCCAAACCTCCACCGTCGATTTCGCTCACAACCGCAATCACTCCCCGAAGCGTAAGTTCGATGACTATGGTACTATATTTGATGAAGACGACGACTACGCCGCCGATCTCCTCGTCAGGATGAAGAAAGACAAACCAGAAGCGGTGAATTCCTCCTCCGACGCCGCTGTTATGTCCACCGCGGTCTCTGCTAGGTCTTCCGACGCGCGATCGTCGTCGCCACGCGCGCGCGCCGCTTTACAGTCCCACTCGACTCGGTACGAGTCACGGTTACAGTTCTTTGTCAGAATGATTTCCAAAACCGTGGTGATGCACGCGCCTCCGGAAGACAGTGTGAAATCGATCCACGAGAGAATCGAAATGATGACTGGTATTCCGATTGTGGAGCAGCGTTTGATATACAGAGGGAAACAGCTTCGGTGGGAACAGACTCTGGATGAATGCGCGATTGAAAACGACGCGAATGTTCAATTGGTTTGTCGTATGAAAAGCACGAGGCACCCGCAAGGTTGGAAACTTATGGATGAAATGGTTTCAATAATTTGGCGTCTCTGCAGAGGAGAAAAGGTTCACGATTCACTAAAAATCATTAAGGGTTTGATGACTAGTTATTTGAGTTTGGCTCAGTCGATAGTCGTAAACGAATATTTTGCTTCGTATTTTGAAATTTTCTTATCTTCGGATGCTCCTATGGTTTTGGTTATGCTTTATGTTTCATCCTGTCCAGGTAACAAGGATCTTGGTGATTGGTCTATTAGGCATTTTTTGAGTTCGTGTAAAACTATCATGGATAAATCATTTCATGGTCAATGTGCTCGTTTGGTATTGGAATTGTGTAAGGTTCTTAAAAGTGTAGGGCGTCATGATCCTTTGTATATTTTGAGTCAAAGTACTTTTGCGTCGTTGTTGGAGACTGCCACTGTTTCATACTGTTCTTTTGATGATGGGTGTGTATTGCTTAAAGATATTTCACCCTTTGTTCGGGAGCTTGCGGATACGTTGTTGAGGGATTTGGATTTGAGCATGGGACTCCACACCGGTGTGGGGCCGTTGATGAGCGATATGAAGGATTTTACTGCATTTTTGATCCCTATGAGGAGAGGAATCAAAGAGCTGCACACTTTGAAGGGGTCAAGTAGAATCAAAGAGCTGCTGATTCTTAAGTGTTCTATAAGTGATAATGGTAAACTCCATGAGGATCTATCGCATTCTGCTGAAGGGGCTGATAGCCTTCATCTTATATTTATTCAGTTGTTGGGCAAAATGGTTGAGTGCCTTCGAAGCATGAAAGAATGCTTGGCTAACAAGGAACTAGAAGAGGCAGGGGATTTTGTCTATTCGGCGTGGTCTCAGTATCTTTCCATCTTGAAGGAATTATATCAAATCAGTAAGCTCTATGATGGTGCCGAAGAATTGTTTTGGACAGTTCTGTTTCAGGAAAGACGTATGGTGTCTCTACTAATTGTTAAATGTGCAAAGAGAACTGATGATCATCATTGGATTCTTGAGCACAAAGCTGTGACCAATTTTCAGTCTAGGAGGCATTTGGCATTGCTGCTTTTCCCTGATGTAAAAGAAGACTATGAAGAGTTGCATGAGATGCTTATTGACAGGTCTCAGTTATTTACTGAATCTTTTAACTACATAAAACATGCAGAGCCTGAGTCTCTTCATGCTGGTCTATTTATGGAGTTCAAAAATGAGGAAGCTACAGGACCAGGTGTACTGAGGGAGTGGTTTTTTTTGGTTTGTCAAGCAATATTTAATCCGCAGAATGCCCTTTTTTTGGCATGCCCAAATGACAGAAGAAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACCTGCAGTACTTCGAGTTCTCTGGTCGTGTTATTGCATTAGCTTTGATGCACAGGGTGCACGTAGGTATTGTTTTTGATCGTGTGTTTTTTGTGCAATTGGCTGGAAAATCTATTACTTTAGAAGATATAAAGGATGCAGATCCTTACTTGTATAGTAGCTGCAAACAAATATTGGAGATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACCTTTGTTAGAGAGGTGGAGGAATTAGGATACAGGAAAGTGATTGAGCTTTGCCCTGGTGGGGAAAGCCTTGTTGTGAATAGTAAGAACAGGGAGAAGTATGTTAATCTTCTTATACAGAATTGTTTTCGAACATCCATACATGACCAGGTATCATATTTTGCCAAGGGTTTTGCTGATATACTGTCCAACTCAACGCTCCAGCAGTTCTTCTTTCAAAGCTTAGAGCTCAAAGATCTTGATTGGATGCTGCATGGGAGTGATAAAACCATTTCTGTTGAGGATTGGAAGGCACATACAAAGTATAGTGACTATAAAGAGAGTGATCACCAGATATCTTGGTTTTGGGAGATTGTTGGGAAAATGTCAGCTGAACAAAGGAAGGTTCTGTTGTTCTTTTGGACATCAGTGAAACATTTACCAGTTGAGGGTTTTCGTGGCTGTGTTTCCCAGCATATTCATCTAAGGCTATCATGCAAGATCGTCTTGGAATCATCACTCAAGAACACATTGGTTGCAGTTTTGGTACCTGGTAAATAG 2616 0.4228 MTVIQTSTVDFAHNRNHSPKRKFDDYGTIFDEDDDYAADLLVRMKKDKPEAVNSSSDAAVMSTAVSARSSDARSSSPRARAALQSHSTRYESRLQFFVRMISKTVVMHAPPEDSVKSIHERIEMMTGIPIVEQRLIYRGKQLRWEQTLDECAIENDANVQLVCRMKSTRHPQGWKLMDEMVSIIWRLCRGEKVHDSLKIIKGLMTSYLSLAQSIVVNEYFASYFEIFLSSDAPMVLVMLYVSSCPGNKDLGDWSIRHFLSSCKTIMDKSFHGQCARLVLELCKVLKSVGRHDPLYILSQSTFASLLETATVSYCSFDDGCVLLKDISPFVRELADTLLRDLDLSMGLHTGVGPLMSDMKDFTAFLIPMRRGIKELHTLKGSSRIKELLILKCSISDNGKLHEDLSHSAEGADSLHLIFIQLLGKMVECLRSMKECLANKELEEAGDFVYSAWSQYLSILKELYQISKLYDGAEELFWTVLFQERRMVSLLIVKCAKRTDDHHWILEHKAVTNFQSRRHLALLLFPDVKEDYEELHEMLIDRSQLFTESFNYIKHAEPESLHAGLFMEFKNEEATGPGVLREWFFLVCQAIFNPQNALFLACPNDRRRFFPNPASKVHPLHLQYFEFSGRVIALALMHRVHVGIVFDRVFFVQLAGKSITLEDIKDADPYLYSSCKQILEMDADFIDSDALGLTFVREVEELGYRKVIELCPGGESLVVNSKNREKYVNLLIQNCFRTSIHDQVSYFAKGFADILSNSTLQQFFFQSLELKDLDWMLHGSDKTISVEDWKAHTKYSDYKESDHQISWFWEIVGKMSAEQRKVLLFFWTSVKHLPVEGFRGCVSQHIHLRLSCKIVLESSLKNTLVAVLVPGK* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0352 871 Pfam Ubiquitin family 97 165 IPR000626 GO:0005515
Lan16g0352 871 Pfam HECT-domain (ubiquitin-transferase) 585 840 IPR000569 GO:0004842
Lan16g0352 871 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 76 846 - -
Lan16g0352 871 SUPERFAMILY Ubiquitin-like 90 171 IPR029071 -
Lan16g0352 871 Gene3D - 86 178 - -
Lan16g0352 871 SUPERFAMILY Hect, E3 ligase catalytic domain 532 844 IPR035983 GO:0004842
Lan16g0352 871 ProSiteProfiles HECT domain profile. 556 838 IPR000569 GO:0004842
Lan16g0352 871 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 76 846 - -
Lan16g0352 871 Gene3D Hect, E3 ligase catalytic domains 538 769 - -
Lan16g0352 871 SMART ubq_7 94 164 IPR000626 GO:0005515
Lan16g0352 871 SMART hect_3 554 868 IPR000569 GO:0004842
Lan16g0352 871 MobiDBLite consensus disorder prediction 67 86 - -
Lan16g0352 871 Gene3D Hect, E3 ligase catalytic domain 780 861 - -
Lan16g0352 871 PRINTS Ubiquitin signature 103 123 IPR019956 -
Lan16g0352 871 PRINTS Ubiquitin signature 124 144 IPR019956 -
Lan16g0352 871 PRINTS Ubiquitin signature 145 166 IPR019956 -
Lan16g0352 871 ProSiteProfiles Ubiquitin domain profile. 94 168 IPR000626 GO:0005515
Lan16g0352 871 Gene3D Hect, E3 ligase catalytic domain 656 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0352 Lan-Chr16 3006479 3015724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0352 94 166 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.432 5.54e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0352 - - gmx:100789233 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0521 4 7796415 7800961 Lan16g0352 16 3006479 3015724 LSH