Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0345 ATGGTTTCTCTAGAAGAGTCTCGGTCCAATTCGACCCGGTTTTCATTGAACCGGAGCTATCAGTTCCACTCTTCCAAAACGCACCGTCAAATAGGGAGGTCGATGCGAACAATACGATCCAATTTCTTCCAAGATGATAACGGTAACAACAGTTGCACTTTCACTGATAAATCCACTTGCTTATCGGAAAATCTCTCTGACTCTGTCGTCGATTTTCGCCTTGGCGAACTAGCTTCTCGGAACAGCAAATCCGTCAAGCCCTGCGCCGCCTCCGACGAGGAACTACTCGATTTCTCTCACGCCTTTAGTGATTTCTCTGCCTACAGCAGCGATATCTCCGGTGAGCTACAGAAGCTAGCGTGCTTGCCGTCGCCGGAATATGCTATTAAGAGTGACTCTTCCGGTGATAAATCGGAACATGAACCGGAGCCGGAGCCTTGCATGGGATTTCTGCAGAGGGAGAATTTCTCAACTGAGATTATCGAGAGTATTTTGCCGGAGGATCTTCAGCCGACGGTGAAGATGTGCATCGACGGTCTCCAGTCGCCGTCGGTTGCCGTGAAACGATCGGCGGCTGCGAAATTAAGACTATTGGCGAAGAATCGCGCCGATAACAGAGTTCTGATCGCTGAGTGCGGTGCGGTTCCCGCTTTGGTTCCACTTCTCCGGTGCACTGATCCGTGGACTCAAGAACACGCCGTAACGGCGTTGCTGAATCTGTCTCTTCACGAAGACAACAAGATGCTGATAACAAACGCCGGAGCAGTGAAATCTCTGATTTATGTTCTCAAAACAGGGACTGAAACATCAAAGCAAAACGCTGCATGTGCTTTACTAAGCCTGGCGTTGGTGGAAGAAAACAAGGCTTCGATCGGCGCTTCTGGCGCAATACCACCGCTGGTTTCGCTCTTAATGAACGGTTCAAACCGTGGAAAGAAGGACGCACTAACAACACTGTATAAACTATGTTCCGTGAAGCAGAACAAGGAGAGAACGGTGAGAGCAGGAGCAGTGAAGCCGCTGGTGGAGCTGGTGGCGGAGCAGGGGAGTGGTATGGCGGAGAAGGCGATGGTGGTGCTGAACAGTGTGGCGGGAATTGAGGAAGGGAAAGAGGCGATTGTAGAAGAAGGAGGGATTGCTGCACTTGTGGAAGTGATTGAAGATGGTTCTATGAAGGGAAAAGAGTTTGCTGTTTTGACACTGTTGCAGTTGTGTGGTGATAGTGTGAACAATAGAGGGTTGCTTGTGAGGGAAGGTGGAATTCCTCCACTTGTTGCTCTTTCTCAAACTGGGACTGCTAGAGCTAAGAACAAGGCTGAACAACTCCTTCGATATTTGAGAGAATCAAGACAAGAAGCATCGACTTCAACTTCTTAG 1377 0.4946 MVSLEESRSNSTRFSLNRSYQFHSSKTHRQIGRSMRTIRSNFFQDDNGNNSCTFTDKSTCLSENLSDSVVDFRLGELASRNSKSVKPCAASDEELLDFSHAFSDFSAYSSDISGELQKLACLPSPEYAIKSDSSGDKSEHEPEPEPCMGFLQRENFSTEIIESILPEDLQPTVKMCIDGLQSPSVAVKRSAAAKLRLLAKNRADNRVLIAECGAVPALVPLLRCTDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKASIGASGAIPPLVSLLMNGSNRGKKDALTTLYKLCSVKQNKERTVRAGAVKPLVELVAEQGSGMAEKAMVVLNSVAGIEEGKEAIVEEGGIAALVEVIEDGSMKGKEFAVLTLLQLCGDSVNNRGLLVREGGIPPLVALSQTGTARAKNKAEQLLRYLRESRQEASTSTS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0345 458 SMART arm_5 243 283 IPR000225 GO:0005515
Lan16g0345 458 SMART arm_5 366 406 IPR000225 GO:0005515
Lan16g0345 458 SMART arm_5 284 324 IPR000225 GO:0005515
Lan16g0345 458 SMART arm_5 325 365 IPR000225 GO:0005515
Lan16g0345 458 SMART arm_5 408 448 IPR000225 GO:0005515
Lan16g0345 458 SMART arm_5 202 242 IPR000225 GO:0005515
Lan16g0345 458 Pfam Armadillo/beta-catenin-like repeat 204 241 IPR000225 GO:0005515
Lan16g0345 458 Pfam Armadillo/beta-catenin-like repeat 286 324 IPR000225 GO:0005515
Lan16g0345 458 Coils Coil 432 452 - -
Lan16g0345 458 Gene3D - 166 313 IPR011989 -
Lan16g0345 458 Gene3D - 314 454 IPR011989 -
Lan16g0345 458 SUPERFAMILY ARM repeat 170 447 IPR016024 -
Lan16g0345 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 213 255 IPR000225 GO:0005515
Lan16g0345 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Lan16g0345 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 295 337 IPR000225 GO:0005515
Lan16g0345 458 PANTHER U BOX DOMAIN-CONTAINING 6 455 - -
Lan16g0345 458 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0345 Lan-Chr16 2813149 2830847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0345 87 451 U-box Gene Family AT2G23140 43.968 1.22e-84 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0345 - - gmx:100818658 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0718 19 13506104 13508895 Lan16g0345 16 2813149 2830847 LSH