Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0344 ATGGAAATGGACCCTGGCAAGCTTTTCATCGGAGGGATTTCCTGGGACACAAATGAAGACCGACTCAGACAGTATTTCCAGAATTTTGGAGATGTAGTGGAAGCTGTGATCATGAAGGATAGGACCACTGGGCGTGCCCGTGGTTTCGGGTTTATTGTTTTTGCTGATCCTTCTGTTGCCGAGCGAGTTGTTATGGAAAAGCATGTCATAGATGGAAGAGCTGTTGAAGCAAAAAAGGCTGTCCCTAGAGATGATCAGAATGTTCTGAGCAGAAGCAACAGCAGCAGTCATGGATCTCCTGGTCCTTCTCCTACCCGCACAAAGAAGATATTTGTTGGAGGTCTAGCATCCACAGTCACCGAGAGTGACTTTAAGATGTACTTTGAACAATTTGGAACAATTACCGATGTTGTTGTGATGTATGACCATAACACTCAAAGGCCAAGAGGTTTTGGATTCATCACCTTTGATTCCGAGCAAGGAGTTGAGAAGGTGCTCTACAAAACTTTTCATGAATTGCATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATTGTCTCCAGGTCCAAGTAGAGCTCAGTTAGGTGGATATAACTATGGTCTAAGTAGAGTTAGTAGCTTTGCTAATGGTTTTCTTCAGGGATATAATCCAAGTCTGGTTGGAGGGAATGGACTTAGAATAGACGATAGATTGAGTCCTGTTACTGTCGGTCGCAGTGGATATTCTGTTATGAGTCCTGGTTATGGATCAGGACTCAACTTTGAGCCACCATTGAGCCAACTTCTCCTAGGACGGGCATTGAACCCTTCATATAGTGCAAGTCCTAGCAGGTACGGTAATGCCATGGGGTATGCTGGTAACAATTCATATAGCACAGGCAACAATTCAACCATAAGTTCAGCAAATCAGAATTTGTGGGGGAATGGGAATTTTAACTATGCTACTAACCCTAGAAGCTCTGATTCTTTTGCTGACTATGGAAGCGGAAATCCAAACATGGGTTCTTTTGGTCACATCGGACCACTTTGGAGTTCCTCCCTCGGTACTGATCAAGCTGGAGCCATTGGCTCCGGATATGGTAAGAGCAGTCTTAGTTATAGCTCTGGAGATGTGATTTTAGGGTCAAAAGCAGTAGGCTATGGAAAAAGTAGGGAAAATGTTGCTGCACCAGCTTCATCATATGCTGCTCTATCAAACGGAAGTTATGACGATGCATACAACTACAAAGGTACTTATGAAGCTGGGTCATTCTATGGGGACTATACTTGGGGATCATCACCTTCAGAACTAGCTGATGTTGGCACTCTTGGTTTTGGCCTTGGAAATGCCGTTTCGGATTTAGTGAGCAAAAGGTCTGGTGGCCACATTGAGGCTTATGCTGTTGCCAATAGACAGCCAGATAGAGGAATTGCTGCCTAG 1428 0.444 MEMDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFADPSVAERVVMEKHVIDGRAVEAKKAVPRDDQNVLSRSNSSSHGSPGPSPTRTKKIFVGGLASTVTESDFKMYFEQFGTITDVVVMYDHNTQRPRGFGFITFDSEQGVEKVLYKTFHELHGKMVEVKRAVPKELSPGPSRAQLGGYNYGLSRVSSFANGFLQGYNPSLVGGNGLRIDDRLSPVTVGRSGYSVMSPGYGSGLNFEPPLSQLLLGRALNPSYSASPSRYGNAMGYAGNNSYSTGNNSTISSANQNLWGNGNFNYATNPRSSDSFADYGSGNPNMGSFGHIGPLWSSSLGTDQAGAIGSGYGKSSLSYSSGDVILGSKAVGYGKSRENVAAPASSYAALSNGSYDDAYNYKGTYEAGSFYGDYTWGSSPSELADVGTLGFGLGNAVSDLVSKRSGGHIEAYAVANRQPDRGIAA* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0344 475 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Lan16g0344 475 MobiDBLite consensus disorder prediction 86 103 - -
Lan16g0344 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 66 IPR000504 GO:0003723
Lan16g0344 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 167 IPR000504 GO:0003723
Lan16g0344 475 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 475 - -
Lan16g0344 475 MobiDBLite consensus disorder prediction 81 108 - -
Lan16g0344 475 Gene3D - 5 86 IPR012677 -
Lan16g0344 475 SMART rrm1_1 109 181 IPR000504 GO:0003723
Lan16g0344 475 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lan16g0344 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lan16g0344 475 SUPERFAMILY RNA-binding domain, RBD 99 205 IPR035979 GO:0003676
Lan16g0344 475 Gene3D - 87 202 IPR012677 -
Lan16g0344 475 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Lan16g0344 475 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lan16g0344 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Lan16g0344 475 CDD RRM2_DAZAP1 106 185 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0344 Lan-Chr16 2807323 2814222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0344 8 198 Eukaryotic Initiation Factors Gene Family AT2G36660 28.643 1.31e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0344 K14411 - pvy:116115801 603.594