Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0333 ATGGACATCTTCGCCGCCGCCCACGTTTCCCCATTCCCAAATTCCGGTGATCTCATTTACGACCCTCTCTTTTCCACCACCGACCTCCTCTCCCACCGTCACAAGCTCCGCCCCATCCGCCCCCATGGTAATTCCCCCCCTCTCCACAATGCTCACTCAACTCATAACCTTCAACAGCGTCATCTTCAACCCCAAGATCCGCTTCTTCATGGATCCGGCTCATCTTTGGATGATGATGACGACGGAAATTCATCAAGAAGTACTACAGAACCTGGCTCTAGAAAGAGAAGCAAAAAGACGGCGAGAAAGCTTGAAAATTTTGTACAAAAAATGGTAATGAAGGTGATGGAAAAGCAAGAGCAGATGCATAAGCAGTTGGTGAACATTATAGAACAGAAAGAAAGGGAAAGAATAATGAGAGAAGAAGCTTGGAAGCGCGAGGAGATGGAAAGAATTAAAAAAGATGAAGAAGCTAGAGCAGAAGCGAAGTCTCGTAATCAAGCCATCATATGCTTCATTCAGAATCTATTAGGCCATGAAATTCAATTCCCCCAAACAGCAGAAGTAAGCAGCAAAAAAGAAGAGCATGAAGGTGACACGAACATCCGAAGAGATTCCATCATGGATCCAAATAACAGATGGCCAGATGTCGCAGTGCAAGCGCTCATAACCGTAAGAACTTCCTTGGAACCCAAGTTTCGTCTTACCGGATCGAAAGGATCAATATGGGAGGAGATATCTGAAGCAATGCATAAAAGGGGCTACAGCCATTCTGCAAAGAAGTGTAAGGAGAAATGGGAAAACATCAACAAGTACTATAAAAGAACAGTGGGAAGTGGCAAAAAGAGGCGTCAGAATAGTAAAACTTGCCCTTACTTTGATGAATTGGACATTCTTTATAGAAATGGTCTCCTCAATCATGGAAATACCTTGAGCATTACCAACAATGTTCCCAAGATTGAAAAAGAGGAAAGTAAAACTCAATAA 987 0.4336 MDIFAAAHVSPFPNSGDLIYDPLFSTTDLLSHRHKLRPIRPHGNSPPLHNAHSTHNLQQRHLQPQDPLLHGSGSSLDDDDDGNSSRSTTEPGSRKRSKKTARKLENFVQKMVMKVMEKQEQMHKQLVNIIEQKERERIMREEAWKREEMERIKKDEEARAEAKSRNQAIICFIQNLLGHEIQFPQTAEVSSKKEEHEGDTNIRRDSIMDPNNRWPDVAVQALITVRTSLEPKFRLTGSKGSIWEEISEAMHKRGYSHSAKKCKEKWENINKYYKRTVGSGKKRRQNSKTCPYFDELDILYRNGLLNHGNTLSITNNVPKIEKEESKTQ* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0333 328 Pfam Myb/SANT-like DNA-binding domain 212 297 IPR044822 -
Lan16g0333 328 MobiDBLite consensus disorder prediction 47 70 - -
Lan16g0333 328 Coils Coil 145 166 - -
Lan16g0333 328 Gene3D - 214 275 - -
Lan16g0333 328 MobiDBLite consensus disorder prediction 187 209 - -
Lan16g0333 328 Coils Coil 116 136 - -
Lan16g0333 328 PANTHER - 72 326 - -
Lan16g0333 328 MobiDBLite consensus disorder prediction 36 102 - -
Lan16g0333 328 CDD GT1 212 276 - -
Lan16g0333 328 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 72 326 - -
Lan16g0333 328 MobiDBLite consensus disorder prediction 73 95 - -
Lan16g0333 328 MobiDBLite consensus disorder prediction 189 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0333 Lan-Chr16 2700130 2702645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0333 95 302 Trihelix Transcription Factor Family AT5G47660 43.111 2.31e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lan16g0333 Myb_DNA-bind_4 1.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0333 - - pvu:PHAVU_006G139200g 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0446 4 6686054 6696746 Lan16g0333 16 2700130 2702645 LSH
Lan19g0732 19 13714546 13716688 Lan16g0333 16 2700130 2702645 LSH