Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0315 ATGTTTCCAAGGTTGATACACCCCATTGAAGATCCATGTCTTGTTCTCACTGCTGATCCAAAACCTCGCCTTCGTTGGACCCAGGACCTTCATGAAAGGTTCATTGATGCTGTTACTCAGCTTGGAGGTGCTAGCAAAGCTACACCAAAAGCAATCATGCGAACTATGAATGTCAAGGGTCTGACTCTATTTCATTTAAAGAGTCATCTTCAGAAATACAGACTTGGCAAACAATCAGGGAAAGATATCGGTGAGGCATGCAAAGATGGAATGTCAGGTTCATATCTTTTAGAAAGCCCTACTGATAACTCTTCTCCGAAGTTGCCAACTTCCGATACAAACGAGGGTTATGAAATCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAACTACATTTGCAAGTTGAGGCAGAGAAGCATGTGCAGATTCGCCAGGATGCCGAGCGGAGATACATGGCTATGCTTGAAAGAGCTTGCAAAATGCTGGCTGATCAATTTATAGGTGCTACTGTTATAGACACTGATAGTCAAAAGTTTCAAGGAATTGGAATTAACGCACGAAGAGATCCCATGGTTGATGCTCTTGGTTTTTACTCCATGCCATCTTCTGAGGTAGCCAGAGTGCACCTCCCGGAAGAAGAAATACCACCGAGTCTCCCACCCCAACGGGGTGATTGTTCAACCGAAAGTTGTCTAACTTCACACGAAACTTCCGGAGGAATAGGATTACAAGGAACTTCACGTGGCGAAAAAAGAATGATGTTGGACATGGAATCTATGGCAGCACCTTTGATATGGAATGAAGCTAAGATGAGAACTCAAGCCATCAATGTAACTCAAGGTAATCCTCATGGAATGACTAGGTATGGCTGTAGAGATGGAAACTCTACTTGA 900 0.4344 MFPRLIHPIEDPCLVLTADPKPRLRWTQDLHERFIDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDIGEACKDGMSGSYLLESPTDNSSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHVQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIGINARRDPMVDALGFYSMPSSEVARVHLPEEEIPPSLPPQRGDCSTESCLTSHETSGGIGLQGTSRGEKRMMLDMESMAAPLIWNEAKMRTQAINVTQGNPHGMTRYGCRDGNST* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0315 299 Gene3D - 20 78 - -
Lan16g0315 299 MobiDBLite consensus disorder prediction 225 246 - -
Lan16g0315 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Lan16g0315 299 SUPERFAMILY Homeodomain-like 21 77 IPR009057 -
Lan16g0315 299 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Lan16g0315 299 MobiDBLite consensus disorder prediction 96 112 - -
Lan16g0315 299 MobiDBLite consensus disorder prediction 94 113 - -
Lan16g0315 299 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 292 IPR044848 GO:0003700
Lan16g0315 299 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 9 292 - -
Lan16g0315 299 Pfam MYB-CC type transfactor, LHEQLE motif 118 163 IPR025756 -
Lan16g0315 299 MobiDBLite consensus disorder prediction 219 248 - -
Lan16g0315 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0315 Lan-Chr16 2545409 2548922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0315 11 236 G2-like Transcription Factor Family AT3G24120 46.218 2.65e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan16g0315 Myb_DNA-binding 3.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0315 - - lang:109329801 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0560 4 8039066 8043573 Lan16g0315 16 2545409 2548922 LSH
Lan19g0750 19 13913300 13918001 Lan16g0315 16 2545409 2548922 LSH