Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0288 ATGGAGGATTCCGATGGAGTCCTCAACTTCGATTTCGAGGGCGGCCTCGACGCTGCTCCTCCTTCCGCCGCCACTGCCACCGTCCCATCCGCTGCCGCCTCATCCGGACCTCTTATCCACCACGATGCCTCTGCTGCCGCTTCCTCCATGGCCAACGGCAGCTCCGTCGGTATAACCCCTCATTCCGCTGCTGATCACCCCTCCGGCAACGTACAAGGGCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTTCGAAGCCTGTGTATGAAAGGAGACGCGTGCGGGTTCCTTCACCAGTATGATAAGGCGAGGATGCCTGTGTGCCGGTTTTTTCGGCTTTACGGGGAGTGCCGGGAGCAGGATTGTGTTTATAAACACACCAATGAAGATATCAAGGAGTGTAATATGTACAAGTTAGGATTTTGTCCCAATGGGCCTGATTGCCGATATAGACATGCAAAATCTGCTGGACCTCCACCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAGCATTTGTATTCTTACAATTATAATGGTTCTAACAAATTTTTCCAACAAAGAGGTGCTAGCTATAACCAACAAGTTGAAAGATCTCAGTTTCCTCAAGGAGTTAATTCTACAAATCAAGGTGTAACTGGAAAACCCTTAGCAGCAGAGTCAGGTAATGCCCAGCAGCCGCAGCAAGTTCAACAATTGCAGCAGCAGGTCAGCCAGAGCCAAATGCAAAGTCCTGCTAATGGTCAGCCCAATCAAGCCAATAGAACTGCAATCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATCTTGAGTTATCTGTGCAACAAGGAGTATGGGCAACACAAAGGAGCAATGAATCCAAGCTAAATGAAGCCTTTGACTCTGTGGAAAATGTGATATTGATTTTTTCAGTCAATCGAACACGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCAGGGGGGAATTGGAAATATGCTCATGGAACTGCACATTACGGGCGGAATTTTTCTGTTAAATGGTTAAAGTTATGTGAACTGTCATTCCACAAAACTCGCCACTTACGGAATCCATACAATGAGAACCTACCAGTGAAGATAAGTAGAGATTGTCAAGAGTTGGATCCCTCAATTGGTGAGCAATTAGCATCCTTGCTTTATATTGAGCCAGATAGTGAACTCATGGCTATCTCAATTGCAGCAGAGACTAAACGAGAAGAAGAAAAGGCAAAGGGAGTTAATCCCGATAATGCAGGAGAAAATCCAGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAAGAGGAGAGCTTCGGTCAAGGTGTTGGGCCACCTAATCAAGGCAGAGGAAGGGGCAGAGGCATGATGTGGCCGCCTCACATGCCTCTTGGGCGTGGAGCACGACCTATGCCTGGAATGCCAGGATTTAACCCAGGAATGATGGGTGATGGATTACCCTATGGGCCTGATGGATTTGGTATGCCAGATCTTTTTGGTATGGGGCCCCGCGCTTTTGCCCCATATGGTCCTAGGTTCTCTGGTGATTTTGGAGGGCCCCCAGCAGCCATGATGTTTCGTGGGCGGCCCTCACAACCTGGGATGTTTCCTGGTGGTGGGTTCGGGATGATGATGAATCCTGGACGCCCTCCCTTTATGGGAGGGATGGGGGTGGGTGGTCCGCCAAGAGGTGGTAGGCCAGTCAACATGCCTCAAATGTTGCCTCCACCTCCGCCCCCACCTCAGAATGCCAACCGAGTCCCCAAGAGAGATCAAAGAACCAATGACCGGACCGATAGGCATGGCTCAGGATCAGAGCAGGGCAGGAGTCAAGACATGCAGAGTCAAAGCGGCGGACCTGAAGATGACATGCAATACCAGCAAGGATACAAGGCAAATCAGGATGATCAAAATGAAGATAGTGAAAGTGAGGATGAAGCACCGAGGCGATCACGACATGGAGAGGGGAAAAAGAAAAGGGACACATAG 2052 0.4912 MEDSDGVLNFDFEGGLDAAPPSAATATVPSAAASSGPLIHHDASAAASSMANGSSVGITPHSAADHPSGNVQGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSAGPPPPVEEVLQKIQHLYSYNYNGSNKFFQQRGASYNQQVERSQFPQGVNSTNQGVTGKPLAAESGNAQQPQQVQQLQQQVSQSQMQSPANGQPNQANRTAIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELDPSIGEQLASLLYIEPDSELMAISIAAETKREEEKAKGVNPDNAGENPDIVPFEDNEEEEEEESDEEEESFGQGVGPPNQGRGRGRGMMWPPHMPLGRGARPMPGMPGFNPGMMGDGLPYGPDGFGMPDLFGMGPRAFAPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRPPFMGGMGVGGPPRGGRPVNMPQMLPPPPPPPQNANRVPKRDQRTNDRTDRHGSGSEQGRSQDMQSQSGGPEDDMQYQQGYKANQDDQNEDSESEDEAPRRSRHGEGKKKRDT* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0288 683 ProSiteProfiles YTH domain profile. 266 401 IPR007275 GO:0003723
Lan16g0288 683 MobiDBLite consensus disorder prediction 664 683 - -
Lan16g0288 683 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 681 IPR045168 -
Lan16g0288 683 MobiDBLite consensus disorder prediction 574 683 - -
Lan16g0288 683 MobiDBLite consensus disorder prediction 589 606 - -
Lan16g0288 683 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 681 - -
Lan16g0288 683 Gene3D ph1033 like domains 246 404 - -
Lan16g0288 683 MobiDBLite consensus disorder prediction 50 73 - -
Lan16g0288 683 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Lan16g0288 683 MobiDBLite consensus disorder prediction 204 258 - -
Lan16g0288 683 MobiDBLite consensus disorder prediction 610 627 - -
Lan16g0288 683 SUPERFAMILY CCCH zinc finger 76 107 IPR036855 GO:0046872
Lan16g0288 683 Pfam YT521-B-like domain 266 328 IPR007275 GO:0003723
Lan16g0288 683 Pfam YT521-B-like domain 345 400 IPR007275 GO:0003723
Lan16g0288 683 ProSiteProfiles Zinc finger C3H1-type profile. 76 103 IPR000571 GO:0046872
Lan16g0288 683 SMART c3hfinal6 104 130 IPR000571 GO:0046872
Lan16g0288 683 SMART c3hfinal6 76 102 IPR000571 GO:0046872
Lan16g0288 683 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Lan16g0288 683 MobiDBLite consensus disorder prediction 421 480 - -
Lan16g0288 683 Gene3D - 68 132 - -
Lan16g0288 683 MobiDBLite consensus disorder prediction 628 655 - -
Lan16g0288 683 MobiDBLite consensus disorder prediction 440 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0288 Lan-Chr16 2303425 2312625 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan16g0288 YTH 8.6e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0288 K14404 - gmx:100802826 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0288 16 2303425 2312625 Lan16g0288 16 2303425 2312625 ECH
Lan4g0585 4 8193726 8204232 Lan16g0288 16 2303425 2312625 LSH