Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0280 ATGGCACTATCTATGCACAAAGACAATAACAACATCATGGATTCAAGCAAGTATGTGAGGTATACACCAGAACAAGTGGAAGCATTGGAAAGGGTCTATGCTGAATGTCCTAAGCCAAGTTCTTTAAGGAGGCAACAACTCATAAGGGAGTGTCCTATACTCTCTAACATTGAACCAAAACAGATCAAAGTTTGGTTTCAGAATAGAAGATGTCGTGAGAAACAAAGGAAAGAAGCTTCTCGGTTGCAAACAGTGAATAGAAAGCTATCTGCAATGAACAAGCTATTGATGGAAGAGAATGATCGTCTTCAGAAGCAAGTCTCTCATCTGGTTTATGAAAATGGTTACATGAAGCAACAAATAACCACTGTATCTGCTGCTACCACCACAGACAATAGCTGTGAGTCTGTGGTGATGACTGCTCAAAACCAACAGCAAAATATCACACCTCATCAGCATCCTCAAAGGGATGCTAACAACCCAGCTGGTCTTCTCGCCATTGCGGAGGAGACCCTGGCAGAGTTCCTGTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGCATAGTTGCTGTTTCCCGCAATTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTTGTGAGTCTAGAACCCACCAAGGTTGCCGAGATTCTTAAAGATCGACTGTCATGGTATCGTGACTGCCGATGCCTTGATGTGTTGAGCATAGCCCCCACAGGAAATGGAGGCACAATAGAGCTCATGTACATGCAGACTTATGCGCCGACAACATTGGCCGCAGCGCGTGACTTCTGGACACTAAGATACACCACCAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCATTGACTACTTCAACCGGAGGCCCTACAGGGCCCCCATCTTCAAACTTTGTAAGAGCTGAGATGCTTCCTAGTGGCTATCTAATCAGACCCTGTGATGGTGGTGGATCCATTATTCATATTGTTGATCATATTGATTTAGACGTCTGGAGTGTCCCCGAAGTATTGAGGCCTCTCTATGAGTCTTCAAAAATCTTGGCCCAGAAATTGACTATTGCGGCCTTGCAACACATTAGACAAATAGCACAAGAATCAAGTGGAGAAATTCAGTATGGTGGGGGACGCCAGCCCGCTGTTTTAAGGACACTGAGTCAAAGACTTTGCAGGGGTTTTAATGATGCTGTGAATGGGTTTGTTGATGATGGTTGGTCTCTGTTGGGTAATGATGGGGTCGATGATGTGACTATTGCTGTAAACTCAACCCCCAACAAATTTTTCGGGTCCCAGTACAATTCATCAATGTTTCCATCATTTGGAGGCGGGGTCCTGTGTGCCAAAGCATCAATGCTACTTCAGAATGTTCCTCCTCCTTTGCTTGTTCGCTTTTTGAGGGAGCATCGATCCGAGTGGGCTGATTATGGGGTTGATGCATATTCCGCTGCTTGTCATAAGGCTAGTCCCTATGCAGTTCCTTCTGCAAGACCTGCTGATTTCCCCACCAGCCAAATCATTTTACCTCTTGCCCATACAATTGAACACGAGGAGTTCTTGGAGGTAGTTCGTATAGAGGGTCATGCGTTCCCCCCTGATGATGTGTCATTGGCACGAGATATGTATCTTCTGCAGCTGTGCAGTGGGATTGATGAAAATTCGATTGGGGCATGTGCTCAACTTGTGTTTGCTCCTATTGATGAATCATTTGCTGATGATGCTCCTTTACTGCCTTCTGGTTTTCATGTCATACCACTGGCTCCTAAAACAGATGCTCCGGCCAACACTAGGACATTGGATTTGGCATCAACGCTTGAAGTAGGATCTGGTAGTATTCGTCCAGCTGGTGAAACTGATTACAACCTTAGGTCTGTCCTTACGATTGCATTCCAATTCACCTTTGAGAACCATCTGCGAGACAATGTGGCTGCTATGGCTCGCCAGTATGTGCGGAGTGTTGTGGGATCTGTTCAAAGGGTTGCCATGGCAATTGCTCCCGCTCGTCTCAGTACCCAGCTGGTGCCAAAGTCTCTTCCCGGTTCACCAGAGGCCCTTACTTTAGCTCGATGGATTTGTAGAAGCTACAGGATCCACACCGGTGCAGAACTCTTTCGAGTTGAGTCGACATCTGGCGATGCAATCTTGAAGCAACTCTGGCACCATTCTGATGCAATCATGTGCTGTTCTGTAAAAACAAATGCTTCTCCAGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACTACTCTAGTTGCCCTTCAAGATATAATGCTTGATAAAGTTCTTGATGAAGCTGGTAGAAAAGTCCTTTGCTCTGAATTCTCCAACATAATGCAACAAGGATTTGCATATCTGCCATCAGGAATATGTGTATCCAGTATGAATCGTCCAGTATCTTATGAACAAGCCATTGCATGGAAAGTTCTCAATGATGATGATTCCAATCACTGCTTAGCTTTTATGTTCATGAACTGGTCTTTTGTGTGA 2532 0.4554 MALSMHKDNNNIMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKQQITTVSAATTTDNSCESVVMTAQNQQQNITPHQHPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLDVLSIAPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTTSTGGPTGPPSSNFVRAEMLPSGYLIRPCDGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTLSQRLCRGFNDAVNGFVDDGWSLLGNDGVDDVTIAVNSTPNKFFGSQYNSSMFPSFGGGVLCAKASMLLQNVPPPLLVRFLREHRSEWADYGVDAYSAACHKASPYAVPSARPADFPTSQIILPLAHTIEHEEFLEVVRIEGHAFPPDDVSLARDMYLLQLCSGIDENSIGACAQLVFAPIDESFADDAPLLPSGFHVIPLAPKTDAPANTRTLDLASTLEVGSGSIRPAGETDYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPARLSTQLVPKSLPGSPEALTLARWICRSYRIHTGAELFRVESTSGDAILKQLWHHSDAIMCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDEAGRKVLCSEFSNIMQQGFAYLPSGICVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMNWSFV* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0280 843 SUPERFAMILY Bet v1-like 167 378 - -
Lan16g0280 843 Gene3D - 185 378 IPR023393 -
Lan16g0280 843 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
Lan16g0280 843 Coils Coil 82 106 - -
Lan16g0280 843 Pfam MEKHLA domain 698 842 IPR013978 -
Lan16g0280 843 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Lan16g0280 843 Pfam START domain 167 374 IPR002913 GO:0008289
Lan16g0280 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 843 - -
Lan16g0280 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 843 IPR044830 GO:0003700
Lan16g0280 843 SMART HOX_1 14 80 IPR001356 GO:0003677
Lan16g0280 843 CDD bZIP 69 108 - -
Lan16g0280 843 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Lan16g0280 843 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Lan16g0280 843 CDD homeodomain 17 77 IPR001356 GO:0003677
Lan16g0280 843 SMART START_1 166 376 IPR002913 GO:0008289
Lan16g0280 843 CDD START_ArGLABRA2_like 161 377 - -
Lan16g0280 843 Gene3D - 10 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0280 Lan-Chr16 2219594 2226098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0280 1 843 Homeobox Transcription Factor Family AT2G34710 77.661 0.0 1368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan16g0280 START 8.1e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0280 K09338 - gmx:100807428 1530.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0280 16 2219594 2226098 Lan16g0280 16 2219594 2226098 ECH
Lan19g0777 19 14161183 14166690 Lan16g0280 16 2219594 2226098 LSH