Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0276 ATGTCAGTGAATAATCATCTTGGAAGGCCTGCATCAGGTAGAAGAAGATTGAAAGATTTATTGCTTCAAAAAGATAATCACTTCTGTGCCGATTGTAATGCTACAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTTATATGCTTAAAATGCTGTGGTGTGCACCGAAGCCTTGGTACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGAATGGTCAGATGATGAAATAGATGCAATGATTGAAGTTGGGGGAAACTCCTCTGCTAATTCTATTTATGAGGCTTATATTCCTGAAGGATGTACCAAACCGGGACCAGATGCTAGTCACCAGCACCGGGCAAAGTTTATACGATCAAAGTATGAGCATCAAGAATTTTTGAAACCTAGTTTGCGCATTGTGTCCGGAAAAAGCAGTATAGGATCAAGCTCTTCCAAAAGTTTCCTGGATGGTTTTCGAACTACTAGTACTAGTTCACAAAATATGGAAGGTATGGTAGAATTTATCGGAATGTTGAAGGTGAAAGTGATTAAAGGCATAAATTTGGCTATCAGAGATATCAAGTCAAGTGACCCGTATGTTGTTTTGAATCTTGGCCAACAGACTGTGCAGACATCTATAATCAGGAGTAACTTGAATCCAGTCTGGAATGAGGAACATATGCTGTCTGTTCCCGAACAATATGGACCACTTAAATTGAAAGTATTTGATCACGACACGTTTTCTGCTGATGATATAATGGGAGATGCAGACATTGATCTTCAGCCTCTGATAACATCTGCTACAGCATTTGGAGATGCTGGAATGTTTGGCAATATGCAGATAGGAAAGTGGCTGAAATCTAATGACAATGCACTTATCGAAGATAGCACAGTCAATATCGTTGACGGTGCGGTTAAACAAGTGATGACAATCAAGCTCCAGAATGTCGAATCTGGAGAATTAGACTTAGAACTGGAATGGATTCCTCTTGATCAATAG 987 0.3951 MSVNNHLGRPASGRRRLKDLLLQKDNHFCADCNATDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEIDAMIEVGGNSSANSIYEAYIPEGCTKPGPDASHQHRAKFIRSKYEHQEFLKPSLRIVSGKSSIGSSSSKSFLDGFRTTSTSSQNMEGMVEFIGMLKVKVIKGINLAIRDIKSSDPYVVLNLGQQTVQTSIIRSNLNPVWNEEHMLSVPEQYGPLKLKVFDHDTFSADDIMGDADIDLQPLITSATAFGDAGMFGNMQIGKWLKSNDNALIEDSTVNIVDGAVKQVMTIKLQNVESGELDLELEWIPLDQ* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0276 328 PRINTS HIV Rev interacting protein signature 26 45 IPR001164 GO:0005096
Lan16g0276 328 PRINTS HIV Rev interacting protein signature 45 62 IPR001164 GO:0005096
Lan16g0276 328 PRINTS HIV Rev interacting protein signature 66 87 IPR001164 GO:0005096
Lan16g0276 328 SMART C2_3c 173 268 IPR000008 -
Lan16g0276 328 ProSiteProfiles ARF GTPase-activating proteins domain profile. 14 128 IPR001164 GO:0005096
Lan16g0276 328 CDD ArfGap 17 123 - -
Lan16g0276 328 Pfam C2 domain 173 262 IPR000008 -
Lan16g0276 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 7 328 IPR044518 GO:0005096|GO:0005543
Lan16g0276 328 Gene3D C2 domain 170 328 IPR035892 -
Lan16g0276 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 7 328 - -
Lan16g0276 328 ProSiteProfiles C2 domain profile. 154 269 IPR000008 -
Lan16g0276 328 SMART arf_gap_3 14 136 IPR001164 GO:0005096
Lan16g0276 328 Gene3D Arf GTPase activating protein 4 134 IPR038508 -
Lan16g0276 328 CDD C2_ArfGAP 171 315 - -
Lan16g0276 328 SUPERFAMILY ArfGap/RecO-like zinc finger 14 131 IPR037278 -
Lan16g0276 328 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 168 265 IPR035892 -
Lan16g0276 328 Pfam Putative GTPase activating protein for Arf 15 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0276 Lan-Chr16 2189772 2194162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0276 7 328 C2H2 Transcription Factor Family AT4G21160 72.727 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0276 K12486 - gmx:100810806 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0276 16 2189772 2194162 Lan16g0276 16 2189772 2194162 ECH
Lan4g0588 4 8239047 8243639 Lan16g0276 16 2189772 2194162 LSH