Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0268 ATGGATTCTTCAAATGGAGGTGCTAATGGTTGTGGTAATAAAGACAACCAAATCTCATTGAGGAGAGAAAGACCTTCCTACAAACGTCTTAGTCCAAAACAAGTAGACATACTTGAAAAATTCATGAAGGAGTGCCCTCACCCAGACGAAAGCCAACGACTTCAATTAGCTGCTGAAGTTGGAATTGAACCCAAGCAAATCAAGTTTTGGTTCCAAAATAAGAGAACCCAAATGAAGAATCAACATGAAAAGGAAGACAACAATGCATTAAGGATTGAGAATGATAATATTAGAAATGAAAACAGGGAAATCAGAGAGCTGTTGAAGAACATTCTTTGTCCATTTTGTGGGGGTCCATTGTGTAGGGAAGATGAGCATGAACAATATATTCAAACAATGCTTCTTGAAAATGATGTGCTCAAGGCTAAGTATGAGAGCGTTTATAACTTTCTTTCAAGTTACTTGGGGAACCAAATGTCACAGCCTGAGTTACATGCTCTTCTAAGTGCTACCCTAGGATCTTCATCATATGCTCCAGCACTTGGAAATTCAGCAAACCAAGCTATTGATCAAGTTCCTATTCAAAATCAGAATTTCCCTTCACAATTTGTGTCTGGTGATATGTTATTGCCAGAGGTTTCCACCATTTTAAGCACTGATATGCATAAAGCACTAATGATAAAGGTTGCAACAGCTGCTATGGATGAATTAGTGAAGCTTTTGCATATCAATGAACCCGTATGGATAAATTCTTCAACTTGGGATGGGAAATTCATTATTAGTCTTGAGGACTATGAAAAATTGTTTCCTATCACTACTCACTTCAAGGGTCCAAACATTCGTGTAGAATCTTCAAAAGGCATAACAGTAGTGAACATGAGTGGGTTGAACTTGATTGACATGTTTCTGAATTCGGATAAGTGGGTCAATTGTTTCCCAACTATTGTTACTAAAGCAAAAACACTTCATGTAGTTGATAATGGTCTCTCAGAAAGTCGAAGTGGAGCTCTGAAAATGATGTATGGAAAAATGCACACCACGTCACCTTTGGTGCCAGCTCGTGAATTCTGCTTCCTACGCCATTGTCAACAAATTGCACTTGATAAATGGGTGATAATGGATGTTTCATTTGATCCATTTGGTGGCAACAACCCCATTTCTCATTGTTGGAGACACCCCTCAGGATGCATGATTCAGGAAATGAATACTGCATGCTCCATGATAACATGGGTTGAGCACGTGGAAGTGGATGATAAGATCCAAACCCATCCACTGTTCAATGATCTTGTCTGTAGCAGTGTTGCATTTGGAGCAGAAAGATGGCTCCAGGAACTGAAGAGAATGTGTGAGAGATTGGCTCTCTACTATATTGAAATGATACCTAGTCATGATATTAGAGGAGTGATCAATTCATTTGAAGGAAGGAAGAGTATAATGAACCTTTCTCATAGAATGGTTAAAATCTTCTGTGAAAATTTAATCATCTCAGATAAACTTGAGTTCCCACAATTATCTAGTGAGAGAAATGGTGGGATTAAGGTATCTTGTCGCAAAAGCATAGAACCAGGTCAACCAAATGGTATCATTGTCACTGCTATCTCCTCTCTATGGCTCCCTCTACCTTATCAACAAGTTTATAACTTCTTCACAGATGATACCAAACGATTTCAGTGGGATGTACTTTCTTATGGAAGTATGATACACAAGATTGCACAGATTTCAACTAGAAATCAACCTGAAAACTCTATTTCAATCATTCAGCCATTTGTCCCAACAGAAAATATGGTGATCCTCCAAGAAAATTTCACAGATTCCACTGGATCATATTTTATATATGCTCCACTAGATGTAGCAAGTTCAAATGTTGCCATAAAGGGTGAAGATTCAACTTTGATTCCAATTCTCCCATCTGGTTTTGTGATTTGTGGAGATGGAAAACCAAATGCAACTTTTGGAGCATCAAGCAGTAGATATGCTGAAAGATCAGGTTCATTGCTGACAATTGCTTTTCAAACATTGGTTTGTTCTCTACCTGGAATTGTGAACCTTGATATGGGATCTGTGTCAAAGGTTAATGCTGTTCTGACCTCAACAATTGAAAAAATAAAGATTGCTCTCAATTGCACCAGTGTTGAGTAA 2139 0.3815 MDSSNGGANGCGNKDNQISLRRERPSYKRLSPKQVDILEKFMKECPHPDESQRLQLAAEVGIEPKQIKFWFQNKRTQMKNQHEKEDNNALRIENDNIRNENREIRELLKNILCPFCGGPLCREDEHEQYIQTMLLENDVLKAKYESVYNFLSSYLGNQMSQPELHALLSATLGSSSYAPALGNSANQAIDQVPIQNQNFPSQFVSGDMLLPEVSTILSTDMHKALMIKVATAAMDELVKLLHINEPVWINSSTWDGKFIISLEDYEKLFPITTHFKGPNIRVESSKGITVVNMSGLNLIDMFLNSDKWVNCFPTIVTKAKTLHVVDNGLSESRSGALKMMYGKMHTTSPLVPAREFCFLRHCQQIALDKWVIMDVSFDPFGGNNPISHCWRHPSGCMIQEMNTACSMITWVEHVEVDDKIQTHPLFNDLVCSSVAFGAERWLQELKRMCERLALYYIEMIPSHDIRGVINSFEGRKSIMNLSHRMVKIFCENLIISDKLEFPQLSSERNGGIKVSCRKSIEPGQPNGIIVTAISSLWLPLPYQQVYNFFTDDTKRFQWDVLSYGSMIHKIAQISTRNQPENSISIIQPFVPTENMVILQENFTDSTGSYFIYAPLDVASSNVAIKGEDSTLIPILPSGFVICGDGKPNATFGASSSRYAERSGSLLTIAFQTLVCSLPGIVNLDMGSVSKVNAVLTSTIEKIKIALNCTSVE* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0268 712 SMART START_1 228 451 IPR002913 GO:0008289
Lan16g0268 712 Pfam START domain 229 451 IPR002913 GO:0008289
Lan16g0268 712 SUPERFAMILY Bet v1-like 474 671 - -
Lan16g0268 712 MobiDBLite consensus disorder prediction 1 16 - -
Lan16g0268 712 Gene3D - 227 450 IPR023393 -
Lan16g0268 712 ProSiteProfiles START domain profile. 219 454 IPR002913 GO:0008289
Lan16g0268 712 Coils Coil 80 110 - -
Lan16g0268 712 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Lan16g0268 712 Pfam Homeodomain 26 80 IPR001356 GO:0003677
Lan16g0268 712 SUPERFAMILY Bet v1-like 218 452 - -
Lan16g0268 712 SUPERFAMILY Homeodomain-like 24 88 IPR009057 -
Lan16g0268 712 Gene3D - 11 95 - -
Lan16g0268 712 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 20 708 - -
Lan16g0268 712 MobiDBLite consensus disorder prediction 1 26 - -
Lan16g0268 712 CDD homeodomain 21 82 IPR001356 GO:0003677
Lan16g0268 712 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Lan16g0268 712 CDD START_ArGLABRA2_like 223 450 - -
Lan16g0268 712 SMART HOX_1 23 85 IPR001356 GO:0003677
Lan16g0268 712 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 20 708 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0268 Lan-Chr16 2119595 2125766 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0268 22 707 Homeobox Transcription Factor Family AT1G73360 40.429 7.44e-174 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan16g0268 START 1.7e-29 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0268 K09338 - gmx:100795075 768.074