Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0237 ATGGCATCCGCAGAAGCAGCTTCTGCTGGTAGTGGTGTCCGATACGCGCCGGATGATCCAACTCTTCCGCAGCCATGGAAGGGTTTGATTGATGGCAGTACTGGTGTGTTATACTATTGGAATCCTGAAACCAATGATACCCAATATGAAAGACCTGCTCCCTTGGCCCCGCCTGCGTCTTCAGGCCCTGCACCTGGGGCATCTACGCCGAACTTGGCGCCCATACCGAGTGCACACACGGTACAACCTGAACAACAGCAGGGGAGTCACCTCGGCCAACAGTATGGGCAACCGATGCAGCAACAACAGCAGCAGCAGCCATCTCAGGTTGCTCATTCTGAACAGCAGATGAATTCACAGCTGGCACAGTCTGGATATCAAGTGAGACCACAAGTGATGCATCCTCAAGGGCAACACATGATGCAACCTCAAGGACAACAGATGATGTATCCTCATGGACAGCAAATGCATAATCAGATACCGTCACAGCCGATGCATTCCCAGCATTATGGGCAAGGCATGTCTCAGGATCATGGATCCCATAACGTACAACCACAAGCACATCAATTCACTCCCCAGAACATGCACTATATGTCATATCAGCAAAACATGATTCAATCTGGGCAACCAAATTCCCAGTCGGTGCAGCCGAACATGAATGCATCTGGGCAGCCTAACTCTCAGCACATTCAGCATAACATGAATGGTCAGCCCTCTTTTGAAAGTCAACAAGATTATAAAACAGCATATCCGAAGACAAACGATGCAGAGTTTAAGAATGGAAGCCAAGTTGGACATTCACCATCCCAGTATCAACAAAGAAGTGCCTTGCCCGGTCATAACAATCAGAACGTTTCTGCTGAAATCAGTTCAGGTAAAGTACCAAATGTTGGTGCTAATGCTGCCCAACCACAACAATTCAGGGGCTTATCGGGAAACGTGCACCAGTCTCCCTCAGGAATGCAGTCGCCACCGGGTGGTTCTGATTTATTCTATCAACATGGTTCTGGTCCTAACTTCCAAAACCAGATGAGTTCTGGAATGATGCATGGTCATCCATCCCATGTTCATCCTGCTGGCCAAAAGATGGGCCATGAGGACAATTTACATGGCCGGCCTGGGAATGAATATCACTACAATTCTAGCAAAGAGGTGCCAACAATGAGCCGTCATCAGCCGGATTTGGCACAGATACCCATTTCAGGAAACCGACAGGATGCGAGGATTGGCAACCCCACTTTTCAAAATGTAATGCCTGGGGGAAGTGGAATTGCTGGGAATGCTATGCATAACACATTCACTCCTCCAATTGGGGCACCTCCATCTGTCTCAAGTAATGCTCCAACTAGGCCTCCTTATATCGGATCTTCAGATGTCTCGGGTCTCTCACAAGCTGAACTTTACTGTCAGCAACATGAAGTTACAGCAACAGGAGACAACATTCCACCCCCTTTTATGTCATTTGATGCTGCTGGGTTTCCTCCAGAGTTACTAAGGGAGATATATTCTGCTGGCTTCTCCAATCCTACGCCAATTCAGGCTCAAACATGGCCTGTTGCACTACAGGGTAGAGACATAGTGGCAATTGCTAAAACAGGCTCTGGGAAAACATTGGGCTATGTAATTCCTGCCTTCCTTCTTCTTAGACAGCGACATAATAATGCCCTAAATGGCCCTACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGATGAGGTTGTTAAATTTGGCCGTTCTTCACGGATCTCTTGCACGTGTTTGTATGGTGGAGCACCTAAAGCTCTTCAGCTAAAAGAATTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGCCTCAATGATATCCTCGAAATGAAGAAAATTAACTTCGGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGATCGGATGCTTGATATGGGTTTTGAACCTCAAATTCGTAAGATTGTGAATGAGATTCCCCCACGCAGACAAACTCTCATGTATACAGCAACCTGGCCAAAGGAAGTAAGAAAAATTGCCAGTGATCTTCTTGTTAATCCAGTCCAGGTTAACATTGGAAATGTAGATGAGCTTGCTGCAAATAAATCTATCACGCAGTATGTTGAAGTTGTATCACAAATGGAGAAACAGAGGCGTTTGGAGGAGATCCTCAGTCAGCAAGAACGGGGTTCTAAGGTCATAATATTTTGTTCCACGAAGAGGTTATGTGATCAGCTTGCCCGTAGTATTGGTCGTAGTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTATGTTTTAAATCAGTTCCGGTCTGGCAAGTCACCAATTCTGGTTGCAACAGATGTTGCTGCTCGTGGGCTTGACATCAAAGATATAAGGGTGGTGATCAACTATGATTTTCCCACTGGAGTTGAGGACTATGTACACCGTATCGGAAGAACCGGAAGGGCAGGTGCTACTGGAGTGGCATATACATTTTTCTCTGAGCAGGACTGGAAGCATGCAGGTGATTTAATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCACAGCTGAGAGATATAGCTTCACGTGGTCCACCCAATTTTGGAAAGGATCGGGGTGGAATGAATCGGTTTGATTCTGGTGGTCGTGTTGGTGGGCGCTGGGAGGGTGGTGGTCGTGGTGGGATGAGAGATGGTGGCTTTGGTGGACGTGGTGGGATGAGAGATGCTGGCTTTGGTGGTCGTGGTGGCATGAGGGATGGTGGGTTTGGTGGTCGTGGTGGCATGAGGGAAGGTGGGTTTGGTGGTCCTCCTGGTGGCATGAGGGATGGTGGGTTTGGTGGTTCTCCTGGTGGCTTGAGGGATGGTGGATTTGGTGGTCGTGGTGGCATTAGGGATGGATCTGGTGGGCGAGGTGGGAGAGGTGATTTCATTTCAGGTAGGGGTAATAGAGGTAGGGGATTTGATGGCCCTCGTGGGGGTCACGGTGGTTGGGGTAGAGATGAAGAGGGCACGAATGATCGGTACAGCATGGATGGGCGTGGACGAGGGCGTGGACGAGGGCGATTTGACAATAGAAGAGATGTTGGTTTCAGAAACAGAGGCCGAAGTACTAGTCGTAGTCCTGAAAGAGTTCGGACATGGGATGCTGGCAGCAGAAGCCGCAGCAGAAGCAGAAGTAGGAGCTGGAGCAGGGGTCGAAGCCGAAGCCGCAGTTGGTCTCGTGATCGTAGTCGCAGCTACAGCCGCAGTATTAGCCCACATAGGAGCCGCAGCCGTAGCCGTGGCCGTAGAAGTTACAGTCGTAGCCGCAGCCGCAGCCCCGTCGCTTATGTTAGGCGCAATAGACCAAGTAAGTTTTCTGATATAGCACCAGAAGTAGGAGCTGCTACTGATCCAAAAATGTTGGGAGCTGAACATGTGGAGCAAGTACCTGTTGTTGGGAGTACTGGCCCAGATAATCCAGAGGCTGTAGACCTTTCTCATCAACCAGGTTCTGGTGTTTGA 3516 0.49 MASAEAASAGSGVRYAPDDPTLPQPWKGLIDGSTGVLYYWNPETNDTQYERPAPLAPPASSGPAPGASTPNLAPIPSAHTVQPEQQQGSHLGQQYGQPMQQQQQQQPSQVAHSEQQMNSQLAQSGYQVRPQVMHPQGQHMMQPQGQQMMYPHGQQMHNQIPSQPMHSQHYGQGMSQDHGSHNVQPQAHQFTPQNMHYMSYQQNMIQSGQPNSQSVQPNMNASGQPNSQHIQHNMNGQPSFESQQDYKTAYPKTNDAEFKNGSQVGHSPSQYQQRSALPGHNNQNVSAEISSGKVPNVGANAAQPQQFRGLSGNVHQSPSGMQSPPGGSDLFYQHGSGPNFQNQMSSGMMHGHPSHVHPAGQKMGHEDNLHGRPGNEYHYNSSKEVPTMSRHQPDLAQIPISGNRQDARIGNPTFQNVMPGGSGIAGNAMHNTFTPPIGAPPSVSSNAPTRPPYIGSSDVSGLSQAELYCQQHEVTATGDNIPPPFMSFDAAGFPPELLREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYVIPAFLLLRQRHNNALNGPTVLVLAPTRELATQIQDEVVKFGRSSRISCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKINFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGNVDELAANKSITQYVEVVSQMEKQRRLEEILSQQERGSKVIIFCSTKRLCDQLARSIGRSFGAAAIHGDKSQGERDYVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAGDLIKVLEGANQHVLPQLRDIASRGPPNFGKDRGGMNRFDSGGRVGGRWEGGGRGGMRDGGFGGRGGMRDAGFGGRGGMRDGGFGGRGGMREGGFGGPPGGMRDGGFGGSPGGLRDGGFGGRGGIRDGSGGRGGRGDFISGRGNRGRGFDGPRGGHGGWGRDEEGTNDRYSMDGRGRGRGRGRFDNRRDVGFRNRGRSTSRSPERVRTWDAGSRSRSRSRSRSWSRGRSRSRSWSRDRSRSYSRSISPHRSRSRSRGRRSYSRSRSRSPVAYVRRNRPSKFSDIAPEVGAATDPKMLGAEHVEQVPVVGSTGPDNPEAVDLSHQPGSGV* 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0237 1171 SMART ww_5 21 54 IPR001202 GO:0005515
Lan16g0237 1171 Pfam Helicase conserved C-terminal domain 717 825 IPR001650 -
Lan16g0237 1171 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Lan16g0237 1171 MobiDBLite consensus disorder prediction 161 183 - -
Lan16g0237 1171 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 252 947 - -
Lan16g0237 1171 MobiDBLite consensus disorder prediction 862 907 - -
Lan16g0237 1171 CDD WW 23 54 IPR001202 GO:0005515
Lan16g0237 1171 MobiDBLite consensus disorder prediction 73 123 - -
Lan16g0237 1171 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 486 514 IPR014014 GO:0003724
Lan16g0237 1171 Pfam WW domain 22 52 IPR001202 GO:0005515
Lan16g0237 1171 CDD SF2_C_DEAD 705 834 - -
Lan16g0237 1171 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 252 947 - -
Lan16g0237 1171 SMART helicmild6 741 825 IPR001650 -
Lan16g0237 1171 MobiDBLite consensus disorder prediction 1087 1105 - -
Lan16g0237 1171 MobiDBLite consensus disorder prediction 998 1059 - -
Lan16g0237 1171 Pfam DEAD/DEAH box helicase 510 680 IPR011545 GO:0003676|GO:0005524
Lan16g0237 1171 SUPERFAMILY WW domain 16 53 IPR036020 GO:0005515
Lan16g0237 1171 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Lan16g0237 1171 MobiDBLite consensus disorder prediction 935 1171 - -
Lan16g0237 1171 Gene3D - 696 866 IPR027417 -
Lan16g0237 1171 SMART ultradead3 505 708 IPR014001 -
Lan16g0237 1171 MobiDBLite consensus disorder prediction 1072 1086 - -
Lan16g0237 1171 MobiDBLite consensus disorder prediction 207 299 - -
Lan16g0237 1171 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 637 645 IPR000629 -
Lan16g0237 1171 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 720 864 IPR001650 -
Lan16g0237 1171 MobiDBLite consensus disorder prediction 1 123 - -
Lan16g0237 1171 Gene3D - 461 695 IPR027417 -
Lan16g0237 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 840 IPR027417 -
Lan16g0237 1171 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 517 691 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0237 Lan-Chr16 1896946 1904136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0237 474 845 Eukaryotic Initiation Factors Gene Family AT3G19760 35.657 5.71e-67 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0237 K12823 - gmx:100807830 1322.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0803 19 14517555 14525406 Lan16g0237 16 1896946 1904136 LSH