Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan16g0237 | ATGGCATCCGCAGAAGCAGCTTCTGCTGGTAGTGGTGTCCGATACGCGCCGGATGATCCAACTCTTCCGCAGCCATGGAAGGGTTTGATTGATGGCAGTACTGGTGTGTTATACTATTGGAATCCTGAAACCAATGATACCCAATATGAAAGACCTGCTCCCTTGGCCCCGCCTGCGTCTTCAGGCCCTGCACCTGGGGCATCTACGCCGAACTTGGCGCCCATACCGAGTGCACACACGGTACAACCTGAACAACAGCAGGGGAGTCACCTCGGCCAACAGTATGGGCAACCGATGCAGCAACAACAGCAGCAGCAGCCATCTCAGGTTGCTCATTCTGAACAGCAGATGAATTCACAGCTGGCACAGTCTGGATATCAAGTGAGACCACAAGTGATGCATCCTCAAGGGCAACACATGATGCAACCTCAAGGACAACAGATGATGTATCCTCATGGACAGCAAATGCATAATCAGATACCGTCACAGCCGATGCATTCCCAGCATTATGGGCAAGGCATGTCTCAGGATCATGGATCCCATAACGTACAACCACAAGCACATCAATTCACTCCCCAGAACATGCACTATATGTCATATCAGCAAAACATGATTCAATCTGGGCAACCAAATTCCCAGTCGGTGCAGCCGAACATGAATGCATCTGGGCAGCCTAACTCTCAGCACATTCAGCATAACATGAATGGTCAGCCCTCTTTTGAAAGTCAACAAGATTATAAAACAGCATATCCGAAGACAAACGATGCAGAGTTTAAGAATGGAAGCCAAGTTGGACATTCACCATCCCAGTATCAACAAAGAAGTGCCTTGCCCGGTCATAACAATCAGAACGTTTCTGCTGAAATCAGTTCAGGTAAAGTACCAAATGTTGGTGCTAATGCTGCCCAACCACAACAATTCAGGGGCTTATCGGGAAACGTGCACCAGTCTCCCTCAGGAATGCAGTCGCCACCGGGTGGTTCTGATTTATTCTATCAACATGGTTCTGGTCCTAACTTCCAAAACCAGATGAGTTCTGGAATGATGCATGGTCATCCATCCCATGTTCATCCTGCTGGCCAAAAGATGGGCCATGAGGACAATTTACATGGCCGGCCTGGGAATGAATATCACTACAATTCTAGCAAAGAGGTGCCAACAATGAGCCGTCATCAGCCGGATTTGGCACAGATACCCATTTCAGGAAACCGACAGGATGCGAGGATTGGCAACCCCACTTTTCAAAATGTAATGCCTGGGGGAAGTGGAATTGCTGGGAATGCTATGCATAACACATTCACTCCTCCAATTGGGGCACCTCCATCTGTCTCAAGTAATGCTCCAACTAGGCCTCCTTATATCGGATCTTCAGATGTCTCGGGTCTCTCACAAGCTGAACTTTACTGTCAGCAACATGAAGTTACAGCAACAGGAGACAACATTCCACCCCCTTTTATGTCATTTGATGCTGCTGGGTTTCCTCCAGAGTTACTAAGGGAGATATATTCTGCTGGCTTCTCCAATCCTACGCCAATTCAGGCTCAAACATGGCCTGTTGCACTACAGGGTAGAGACATAGTGGCAATTGCTAAAACAGGCTCTGGGAAAACATTGGGCTATGTAATTCCTGCCTTCCTTCTTCTTAGACAGCGACATAATAATGCCCTAAATGGCCCTACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGATGAGGTTGTTAAATTTGGCCGTTCTTCACGGATCTCTTGCACGTGTTTGTATGGTGGAGCACCTAAAGCTCTTCAGCTAAAAGAATTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGCCTCAATGATATCCTCGAAATGAAGAAAATTAACTTCGGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGATCGGATGCTTGATATGGGTTTTGAACCTCAAATTCGTAAGATTGTGAATGAGATTCCCCCACGCAGACAAACTCTCATGTATACAGCAACCTGGCCAAAGGAAGTAAGAAAAATTGCCAGTGATCTTCTTGTTAATCCAGTCCAGGTTAACATTGGAAATGTAGATGAGCTTGCTGCAAATAAATCTATCACGCAGTATGTTGAAGTTGTATCACAAATGGAGAAACAGAGGCGTTTGGAGGAGATCCTCAGTCAGCAAGAACGGGGTTCTAAGGTCATAATATTTTGTTCCACGAAGAGGTTATGTGATCAGCTTGCCCGTAGTATTGGTCGTAGTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTATGTTTTAAATCAGTTCCGGTCTGGCAAGTCACCAATTCTGGTTGCAACAGATGTTGCTGCTCGTGGGCTTGACATCAAAGATATAAGGGTGGTGATCAACTATGATTTTCCCACTGGAGTTGAGGACTATGTACACCGTATCGGAAGAACCGGAAGGGCAGGTGCTACTGGAGTGGCATATACATTTTTCTCTGAGCAGGACTGGAAGCATGCAGGTGATTTAATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCACAGCTGAGAGATATAGCTTCACGTGGTCCACCCAATTTTGGAAAGGATCGGGGTGGAATGAATCGGTTTGATTCTGGTGGTCGTGTTGGTGGGCGCTGGGAGGGTGGTGGTCGTGGTGGGATGAGAGATGGTGGCTTTGGTGGACGTGGTGGGATGAGAGATGCTGGCTTTGGTGGTCGTGGTGGCATGAGGGATGGTGGGTTTGGTGGTCGTGGTGGCATGAGGGAAGGTGGGTTTGGTGGTCCTCCTGGTGGCATGAGGGATGGTGGGTTTGGTGGTTCTCCTGGTGGCTTGAGGGATGGTGGATTTGGTGGTCGTGGTGGCATTAGGGATGGATCTGGTGGGCGAGGTGGGAGAGGTGATTTCATTTCAGGTAGGGGTAATAGAGGTAGGGGATTTGATGGCCCTCGTGGGGGTCACGGTGGTTGGGGTAGAGATGAAGAGGGCACGAATGATCGGTACAGCATGGATGGGCGTGGACGAGGGCGTGGACGAGGGCGATTTGACAATAGAAGAGATGTTGGTTTCAGAAACAGAGGCCGAAGTACTAGTCGTAGTCCTGAAAGAGTTCGGACATGGGATGCTGGCAGCAGAAGCCGCAGCAGAAGCAGAAGTAGGAGCTGGAGCAGGGGTCGAAGCCGAAGCCGCAGTTGGTCTCGTGATCGTAGTCGCAGCTACAGCCGCAGTATTAGCCCACATAGGAGCCGCAGCCGTAGCCGTGGCCGTAGAAGTTACAGTCGTAGCCGCAGCCGCAGCCCCGTCGCTTATGTTAGGCGCAATAGACCAAGTAAGTTTTCTGATATAGCACCAGAAGTAGGAGCTGCTACTGATCCAAAAATGTTGGGAGCTGAACATGTGGAGCAAGTACCTGTTGTTGGGAGTACTGGCCCAGATAATCCAGAGGCTGTAGACCTTTCTCATCAACCAGGTTCTGGTGTTTGA | 3516 | 0.49 | MASAEAASAGSGVRYAPDDPTLPQPWKGLIDGSTGVLYYWNPETNDTQYERPAPLAPPASSGPAPGASTPNLAPIPSAHTVQPEQQQGSHLGQQYGQPMQQQQQQQPSQVAHSEQQMNSQLAQSGYQVRPQVMHPQGQHMMQPQGQQMMYPHGQQMHNQIPSQPMHSQHYGQGMSQDHGSHNVQPQAHQFTPQNMHYMSYQQNMIQSGQPNSQSVQPNMNASGQPNSQHIQHNMNGQPSFESQQDYKTAYPKTNDAEFKNGSQVGHSPSQYQQRSALPGHNNQNVSAEISSGKVPNVGANAAQPQQFRGLSGNVHQSPSGMQSPPGGSDLFYQHGSGPNFQNQMSSGMMHGHPSHVHPAGQKMGHEDNLHGRPGNEYHYNSSKEVPTMSRHQPDLAQIPISGNRQDARIGNPTFQNVMPGGSGIAGNAMHNTFTPPIGAPPSVSSNAPTRPPYIGSSDVSGLSQAELYCQQHEVTATGDNIPPPFMSFDAAGFPPELLREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYVIPAFLLLRQRHNNALNGPTVLVLAPTRELATQIQDEVVKFGRSSRISCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKINFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGNVDELAANKSITQYVEVVSQMEKQRRLEEILSQQERGSKVIIFCSTKRLCDQLARSIGRSFGAAAIHGDKSQGERDYVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAGDLIKVLEGANQHVLPQLRDIASRGPPNFGKDRGGMNRFDSGGRVGGRWEGGGRGGMRDGGFGGRGGMRDAGFGGRGGMRDGGFGGRGGMREGGFGGPPGGMRDGGFGGSPGGLRDGGFGGRGGIRDGSGGRGGRGDFISGRGNRGRGFDGPRGGHGGWGRDEEGTNDRYSMDGRGRGRGRGRFDNRRDVGFRNRGRSTSRSPERVRTWDAGSRSRSRSRSRSWSRGRSRSRSWSRDRSRSYSRSISPHRSRSRSRGRRSYSRSRSRSPVAYVRRNRPSKFSDIAPEVGAATDPKMLGAEHVEQVPVVGSTGPDNPEAVDLSHQPGSGV* | 1172 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan16g0237 | 1171 | SMART | ww_5 | 21 | 54 | IPR001202 | GO:0005515 | |
Lan16g0237 | 1171 | Pfam | Helicase conserved C-terminal domain | 717 | 825 | IPR001650 | - | |
Lan16g0237 | 1171 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 20 | 54 | IPR001202 | GO:0005515 | |
Lan16g0237 | 1171 | MobiDBLite | consensus disorder prediction | 161 | 183 | - | - | |
Lan16g0237 | 1171 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 | 252 | 947 | - | - | |
Lan16g0237 | 1171 | MobiDBLite | consensus disorder prediction | 862 | 907 | - | - | |
Lan16g0237 | 1171 | CDD | WW | 23 | 54 | IPR001202 | GO:0005515 | |
Lan16g0237 | 1171 | MobiDBLite | consensus disorder prediction | 73 | 123 | - | - | |
Lan16g0237 | 1171 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 486 | 514 | IPR014014 | GO:0003724 | |
Lan16g0237 | 1171 | Pfam | WW domain | 22 | 52 | IPR001202 | GO:0005515 | |
Lan16g0237 | 1171 | CDD | SF2_C_DEAD | 705 | 834 | - | - | |
Lan16g0237 | 1171 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 252 | 947 | - | - | |
Lan16g0237 | 1171 | SMART | helicmild6 | 741 | 825 | IPR001650 | - | |
Lan16g0237 | 1171 | MobiDBLite | consensus disorder prediction | 1087 | 1105 | - | - | |
Lan16g0237 | 1171 | MobiDBLite | consensus disorder prediction | 998 | 1059 | - | - | |
Lan16g0237 | 1171 | Pfam | DEAD/DEAH box helicase | 510 | 680 | IPR011545 | GO:0003676|GO:0005524 | |
Lan16g0237 | 1171 | SUPERFAMILY | WW domain | 16 | 53 | IPR036020 | GO:0005515 | |
Lan16g0237 | 1171 | ProSitePatterns | WW/rsp5/WWP domain signature. | 26 | 52 | IPR001202 | GO:0005515 | |
Lan16g0237 | 1171 | MobiDBLite | consensus disorder prediction | 935 | 1171 | - | - | |
Lan16g0237 | 1171 | Gene3D | - | 696 | 866 | IPR027417 | - | |
Lan16g0237 | 1171 | SMART | ultradead3 | 505 | 708 | IPR014001 | - | |
Lan16g0237 | 1171 | MobiDBLite | consensus disorder prediction | 1072 | 1086 | - | - | |
Lan16g0237 | 1171 | MobiDBLite | consensus disorder prediction | 207 | 299 | - | - | |
Lan16g0237 | 1171 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 637 | 645 | IPR000629 | - | |
Lan16g0237 | 1171 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 720 | 864 | IPR001650 | - | |
Lan16g0237 | 1171 | MobiDBLite | consensus disorder prediction | 1 | 123 | - | - | |
Lan16g0237 | 1171 | Gene3D | - | 461 | 695 | IPR027417 | - | |
Lan16g0237 | 1171 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 557 | 840 | IPR027417 | - | |
Lan16g0237 | 1171 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 517 | 691 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan16g0237 | Lan-Chr16 | 1896946 | 1904136 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan16g0237 | 474 | 845 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 35.657 | 5.71e-67 | 230 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan16g0237 | K12823 | - | gmx:100807830 | 1322.76 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lan19g0803 | 19 | 14517555 | 14525406 | Lan16g0237 | 16 | 1896946 | 1904136 | LSH |