Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0230 ATGGATGTAAAGGGAAAAGTACTAAACAAATCAAGCACCATGATCCAAAGTGAAGAAGAGGAGGATATGGACCTAAGGAGAGGCCCTTGGACCCTTGATGAGGACCTTGCCCTTATTAATTACATTGCAAATCATGGTGAAGGTCGATGGAACTCACTTGCTCGTTCAGCTGGACTGAAACGAACCGGTAAGAGTTGTAGATTGAGATGGTTGAATTATTTACGTCCAGATGTGAGACGTGGCAACATAACACTTGAAGAACAACTTCTTATTCTTGAACTCCATGCTCGTTGGGGAAATAGATGGTCGAAAATTGCTCAATATTTACCTGGAAGAACTGACAATGAGATTAAAAATTATTGGAGAACTCGTGTCCAAAAACATGCCAAACAACTTAAATGTGATGTAAATAGCAAACAATTCAAGGATGCTATGCGCTACCTTTGGATGCCAAGGTTGATGGAGCGCATCCAAGCTGCCGCCACTGCCACCGCCGCAACCACGACGACCGATTCATCAACCCTATCTATCACTCCAAATGTCATGACTACCAACAATAACAACAACAATTTTGAGGTTCATAGTGGTGGGAACATGATGTTATCTCCAACAATCATGAACAACAACTTTGGTTGTTCACAAATCAAACAAAGTTATACTCCAGAGAACAGCAGCACAGGAACATCATCAGATTCTTTTGGGACACATGTCTCAGATTTAACTCATGATTATTATAGTGTCCCTAATCTAGATTACTATCAACAAGCTCATCAAGTTAACTACATAGATTGTATCACAAGTCCATCAGGGTTGTTCTCTCCTGAGATGGATTTCCAAACCATGGAACCAAACACCCAATGGATTCAGAATGGGGACATATCCAACAATTTATGGAGTTTTGAGAACATGTTACAACAACTCAATGACAACATGTGA 936 0.4049 MDVKGKVLNKSSTMIQSEEEEDMDLRRGPWTLDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHARWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLMERIQAAATATAATTTTDSSTLSITPNVMTTNNNNNNFEVHSGGNMMLSPTIMNNNFGCSQIKQSYTPENSSTGTSSDSFGTHVSDLTHDYYSVPNLDYYQQAHQVNYIDCITSPSGLFSPEMDFQTMEPNTQWIQNGDISNNLWSFENMLQQLNDNM* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0230 311 Gene3D - 84 147 - -
Lan16g0230 311 SMART sant 79 127 IPR001005 -
Lan16g0230 311 SMART sant 26 76 IPR001005 -
Lan16g0230 311 Gene3D - 26 79 - -
Lan16g0230 311 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Lan16g0230 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 129 IPR017930 -
Lan16g0230 311 CDD SANT 95 123 IPR001005 -
Lan16g0230 311 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 304 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lan16g0230 311 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Lan16g0230 311 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Lan16g0230 311 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Lan16g0230 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 78 IPR017930 -
Lan16g0230 311 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Lan16g0230 311 PANTHER MYB TRANSCRIPTION FACTOR 1 304 - -
Lan16g0230 311 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0230 Lan-Chr16 1815007 1817021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0230 1 298 MYB Transcription Factor Family AT3G06490 54.489 1.61e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan16g0230 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0230 K09422 - gmx:100805341 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0614 4 8552998 8555187 Lan16g0230 16 1815007 1817021 LSH