Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0221 ATGCCCCATGCATCCATGAATCTTCTCTCTCGATGTTGGCACCCTTTCGGGAATTCCATTGATCAATCTTCTTCTTCTTCTTCATCTTCATCTTCTTCAGGTTCCGCCATTCTCTCTAAAGATGGTTTGCTTTGGTTTCGCGATATCGGAAAACATGCCTCCGGCGATTTCTCTATGGCTGTCGTTCAGGCTAATCAGGTTCTCGAAGACCAGAGCCAGATCGAGTCTGGTCCGTTAGGAACATTTGTCGGCGTTTACGATGGTCACGGTGGTCCCGATGCTGCGCGATACGTCTGCGATCATTTGTTCCGCAATTTTCAAGCAATAGCAGCTGAGTCACGGGGAGTTGTGACAGCCGAGACTATTCAAACAGCGTTCCTTCGAACTGAAGAAGGGTTCACTGCTCTTGTTTCTGAACTGTGGAGTACACGGCCTCAAGTTGCCACTACTGGAACTTGTTGTTTGGTTGGGGTTATTTTTCAGCAGACACTCTTTGTGGCAAGTCTTGGAGATTCTCGTCTCGTGCTGGGTACGAAAGTTGGCAACACTGGTGGGGTCGCTGCAATTCAGCTGTCTACAGAGCACAACGCAAATCTTGAGGCCATTAGACAGGAACTCAAAGAATTACACCCCGATGACCCCCAGGTTGTTGTTCTCAAACATGGAGTCTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAATTTAACCGGGAACCAATTAATGCAAAATTCAGACTTCCTGAACCAATGGACATGCCTTTCTTGTCTGCTGATCCAACTATTATTTCTCATCATCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCATCTGAGTAATGAAACAGCAGTGGATATTGTTCACAGCAATCCACGTGCAGGTAGTGCCAATAGACTTGTGAAGGCTGCCCTACACGAAGCTGCTAGAAAACGTGAAATGCGATACTCGGACCTCCATAAGATTGACAAGAAGGTTCGGCGTCATTTTCACGATGATATTACTGTTATTGTTTTATTCTTAAACCACAACCTTATATCAAGAGGCTCAGTCTTAGACCCACCACTCTCAATTCGAAGTGCTCTCGATCACTGA 1143 0.4532 MPHASMNLLSRCWHPFGNSIDQSSSSSSSSSSSGSAILSKDGLLWFRDIGKHASGDFSMAVVQANQVLEDQSQIESGPLGTFVGVYDGHGGPDAARYVCDHLFRNFQAIAAESRGVVTAETIQTAFLRTEEGFTALVSELWSTRPQVATTGTCCLVGVIFQQTLFVASLGDSRLVLGTKVGNTGGVAAIQLSTEHNANLEAIRQELKELHPDDPQVVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINAKFRLPEPMDMPFLSADPTIISHHLQPNDSFLIFASDGLWEHLSNETAVDIVHSNPRAGSANRLVKAALHEAARKREMRYSDLHKIDKKVRRHFHDDITVIVLFLNHNLISRGSVLDPPLSIRSALDH* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0221 380 ProSiteProfiles PPM-type phosphatase domain profile. 56 357 IPR001932 -
Lan16g0221 380 Pfam Protein phosphatase 2C 79 326 IPR001932 -
Lan16g0221 380 CDD PP2Cc 57 357 IPR001932 -
Lan16g0221 380 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 5 380 - -
Lan16g0221 380 SMART PP2C_4 50 355 IPR001932 -
Lan16g0221 380 Gene3D - 46 365 IPR036457 -
Lan16g0221 380 SUPERFAMILY PP2C-like 66 358 IPR036457 -
Lan16g0221 380 ProSitePatterns PPM-type phosphatase domain signature. 82 90 IPR000222 GO:0043169
Lan16g0221 380 PANTHER ALPHABET, ISOFORM E-RELATED 5 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0221 Lan-Chr16 1739227 1745438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0221 6 377 PP2C-type Phosphatase Gene Family AT4G38520 58.530 2.81e-158 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0221 K01102 - gmx:100814799 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0816 19 14658902 14662678 Lan16g0221 16 1739227 1745438 LSH