Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0218 ATGACTTCTTCAACAATCAAACGAACTAAACCAAACCCTTCTCACTCTGTTACCAAAGCAATTGCTCAATACACCGAAGACGCTCGTCTTCACACTGTTTTTGAACAATCCTCTCTCAACTTCTCCAACTCCTCCAATCTCCCCACTACCACCACCACCGATTCCCTCCCTGAACAACAGATCACCACCTACCTCCTCAAGATTCAGCGTGGTGGCACCATCCAGCCCTTCGGCTGCATGATCGCCGTGGACGAACCCTCCTTCCGTATCATTGGGTATTCTGATAATGCCCGCGACATGCTCGGCATAACTCCCCAGTCAGTTCCTATGCTGGAGAGACCGGAGGTGTTTACGGTTGGGACTGATGTTCGGACCATTTTTTCTAACTCTAGCGTGGTTCTGTTAGAGAATGCTTTCCGGGCGCGTGAAATAACGCTCCTCAACCCGATTTGGGTCCATTCCAGAAGCTCGGGGAAGGCTTTTTATGGTATATTGCACCGGATTGATGTTGGTGTTGTTATTGATTTGGAGCCGGCGAGGACTGAAGACCCTGCACTTTCTATTGCTGGAGCAGTGCACAGTCAGAAACTCGCGGTTCGTGCCATTTCATTGTTGCAGTCACTCCCTGGGGGTGACATTAAGCTTCTTGTTGACACTGTGGTTGAGAGTGTTAGGGAGCTAACTGGCTATGATAGAGTTATGGTGTATAAGTTTCATGAGGATGAACATGGTGAGGTTGTTGCTGAGAGTAAGAGGGCTGATTTGGAGCCTTATATAGGTTTGCATTACCCTGCCACTGATATACCGCAGGCTTCACGATTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGCGGATTGTCATGCTTCTCCTGTGAAGGTGGTTCAGGACGAGGCTCTTGTGCAGCCGTTGTGTTTGGTTGGATCCACGCTTCGCGCGCCTCATGGTTGTCATGCTCAATATATGGCTAATATGGGTTCCATTGCTTCGTTGGTGATGGCGGTTATAATCAATGGGAATGATGAAGGTGATGGTGGTCGTAGCTCGATGATGCTTTGGGGTTTGGTTGTTTGCCATCATACTTCTGCTAGGTATATATCGTTTCCTTTACGGTATGCTTGTGAGTTCCTGATGCAGGCCTTTGGGCTGCAATTGAATATGGAACTTCAATTGGCATCACAGTCATTGGAGAAACGAGTTTTGAGGACGCAGACTCTCTTGTGTGACATGCTTCTCAGGGACTCTCCTACTGGCATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTGAAGTGTGATGGAGCGGCTCTCTATTATCAAGGAAATTATCACCCGTTAGGTGTTACCCCAACTGAGTCTCAGATAAGGGACATCATAGAGTGGCTGTTGGCCTTCCATGGAGATTCGACAGGTTTAAGCACTGATAGTTTGGCTGATGCTGGTTACCCTGGTGCCGCCTCACTTGGGGACACAGTTTGTGGGATGGCAGTTGCTTATATTACAGAAAAGGATTTCCTTTTATGGTTCAGATCTCACACGGCAAAAGAGATCAAATGGGGTGGTGCAAAACATCACCCGGAGGATAAGGATGACGGCCAGAGAATGGATCCTCGATCTTCATTTAAGGCATTTTTGGAAGTGGTAAAAAGCCGTAGTTTGCCATGGGAGAATGCAGAAATGGATGCAATTCACTCTTTGCAGCTTATTCTGCGAGACTCTTTTAGAGATGCCGAGCATACCAACTACAAGGCTGTTGTAAATACTAATTTGGCAGAAAGAGAGTTGCAAGGGGTAGATGAACTGAGTTCTGTGGCTAGAGAAATGGTTAGATTGATAGAAACTGCTACTGCTCCCATATTTGCTGTTGACATTGATGGCCGCATAAATGGGTGGAATGCAAAGGTTTCAGAATTGACAGGACTCACAGTTGATGAGGCTATGGGCAAGTCCCTTGTTCATGATATTGTGTTTAAGGAGTATGAAGAAACTGTAGATAGGCTTCTTTCTCATGCTTTAAGAGGTGATGAAGATAAAAATGTTGAGATAAAAATGAGGACGTTTGGCCCGGAACATCAAGATAAGGCAGTTTTTGTTGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTATTGGTCAAGATGTTACAGGACAAAAAATCGTAATGGACAAGTTTGTTAACATACAAGGTGACTACAAAGCTATTATACATAGCCCAAATCCATTGATCCCTCCCATTTTTGCATCGGATGATAACATATGTTGCTTAGAATGGAACACTGCCATGGAAAACCTTACTGGTTGGGTCCGTGCTGATGTCATTGGAAAAATGCTGGTGGGAGAGGTTTTTGGTAGTTGCTGTAAATTGAAGGGTCCAGATGCTATGACAAAGTTCATGATTGTCTTTCACAATGCTCTTGGTGGACAAGATACTGATAAATTCCCTTTTTCATTTCTTGACCGGCATGGAAAATATGTGCAAACTTTCTTGACTGCAAATAAGAGGGTTAACATGGATGGTCAGATCATTGGGGCTTTTTGCTTTCTCCAAATTGTGAATCCCGAACTTCAACAGGCTCTGAAAGTCCAGAAACAACAGGAGAAGAATTGCTTTGCTAGGATGAAAGAATTAGCTTATATTTGCCAAGAAGTAAAGAATCCTTTGAATGGCATTCGCTTTACAAACTCTCTTTTGGAGGCTACAGTCTTGACTGATGAGCAAAGGCAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTAAATATTATACGGGATATTGATCTGGACACTATCGAGGACGGGTCCTTGGAGCTCGAAAAAAGGGAGTTCTTGCTTGGGAATGTCATAAATGCAGTTGTAAGCCAAGTAATGTTATTGCTAAGAGAAAGAAAATTACAGTTGATTCGTGATATTCCTGAACAAATCAAAACATTGGCTCTTTATGGTGATCAATTGAGGATTCAACAAGTCTTAGCTGATTTCTTATTGAATATGGTGCGCTACGCACCATCTCCAGACGGTTGGGTAGAGATTCATGTATGTCCAAGAATAAAACAAATTTCTGATGGACTGACTCTTCTTCATGCTGAATTTAGGATGGTATGTCCTGGTGAAGGTCTTCCTTCTGAATTGATTCAAGACATGTTCCACAACAGTAGGTGGGTGACTCAAGAAGGGTTAGGGCTGAGCATGAGCAGGAAGATTCTAAAGTTAATGAACGGCGAAGTCCAATATATCAGGGAGGCAGAACGGTGCTACTTCTTGATTCTTCTCGAACTACCCATAACACGGAGAAGCTCTACAAGTGTTAACTAG 3342 0.4387 MTSSTIKRTKPNPSHSVTKAIAQYTEDARLHTVFEQSSLNFSNSSNLPTTTTTDSLPEQQITTYLLKIQRGGTIQPFGCMIAVDEPSFRIIGYSDNARDMLGITPQSVPMLERPEVFTVGTDVRTIFSNSSVVLLENAFRAREITLLNPIWVHSRSSGKAFYGILHRIDVGVVIDLEPARTEDPALSIAGAVHSQKLAVRAISLLQSLPGGDIKLLVDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPATDIPQASRFLFKQNRVRMIADCHASPVKVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEGDGGRSSMMLWGLVVCHHTSARYISFPLRYACEFLMQAFGLQLNMELQLASQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYHPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDTVCGMAVAYITEKDFLLWFRSHTAKEIKWGGAKHHPEDKDDGQRMDPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEHTNYKAVVNTNLAERELQGVDELSSVAREMVRLIETATAPIFAVDIDGRINGWNAKVSELTGLTVDEAMGKSLVHDIVFKEYEETVDRLLSHALRGDEDKNVEIKMRTFGPEHQDKAVFVVVNACSSKDYTNNIVGVCFIGQDVTGQKIVMDKFVNIQGDYKAIIHSPNPLIPPIFASDDNICCLEWNTAMENLTGWVRADVIGKMLVGEVFGSCCKLKGPDAMTKFMIVFHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVNMDGQIIGAFCFLQIVNPELQQALKVQKQQEKNCFARMKELAYICQEVKNPLNGIRFTNSLLEATVLTDEQRQFLETSAACEKQMLNIIRDIDLDTIEDGSLELEKREFLLGNVINAVVSQVMLLLRERKLQLIRDIPEQIKTLALYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVCPRIKQISDGLTLLHAEFRMVCPGEGLPSELIQDMFHNSRWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFLILLELPITRRSSTSVN* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0218 1113 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 991 1098 IPR003594 -
Lan16g0218 1113 ProSiteProfiles PAS repeat profile. 738 790 IPR000014 -
Lan16g0218 1113 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 212 379 IPR016132 -
Lan16g0218 1113 Gene3D - 942 1108 IPR036890 -
Lan16g0218 1113 Gene3D - 860 941 - -
Lan16g0218 1113 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1100 IPR036890 -
Lan16g0218 1113 ProSiteProfiles PAS repeat profile. 604 675 IPR000014 -
Lan16g0218 1113 PANTHER TWO-COMPONENT HISTIDINE KINASE 12 1107 - -
Lan16g0218 1113 PANTHER PHYTOCHROME 12 1107 - -
Lan16g0218 1113 CDD PAS 749 857 IPR000014 -
Lan16g0218 1113 SUPERFAMILY PYP-like sensor domain (PAS domain) 611 719 IPR035965 -
Lan16g0218 1113 CDD HATPase_Phy-like 990 1102 IPR044767 -
Lan16g0218 1113 SUPERFAMILY PYP-like sensor domain (PAS domain) 68 182 IPR035965 -
Lan16g0218 1113 SUPERFAMILY GAF domain-like 397 574 - -
Lan16g0218 1113 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 871 935 IPR036097 GO:0000155|GO:0007165
Lan16g0218 1113 ProSitePatterns Phytochrome chromophore attachment site signature. 312 321 IPR013516 -
Lan16g0218 1113 PIRSF Phytochrome_conventional 1 1111 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lan16g0218 1113 Pfam Phytochrome region 402 575 IPR013515 GO:0006355|GO:0009584
Lan16g0218 1113 Gene3D - 193 550 IPR029016 -
Lan16g0218 1113 SUPERFAMILY GAF domain-like 195 386 - -
Lan16g0218 1113 SUPERFAMILY PYP-like sensor domain (PAS domain) 752 855 IPR035965 -
Lan16g0218 1113 Pfam GAF domain 212 389 IPR003018 GO:0005515
Lan16g0218 1113 CDD PAS 615 722 IPR000014 -
Lan16g0218 1113 Pfam PAS fold 738 857 IPR013767 GO:0006355
Lan16g0218 1113 Pfam PAS fold 607 722 IPR013767 GO:0006355
Lan16g0218 1113 Pfam His Kinase A (phospho-acceptor) domain 883 943 IPR003661 GO:0000155|GO:0007165
Lan16g0218 1113 Pfam PAS fold 64 179 IPR013654 GO:0006355
Lan16g0218 1113 SMART HisKA_10 879 943 IPR003661 GO:0000155|GO:0007165
Lan16g0218 1113 SMART pas_2 606 673 IPR000014 -
Lan16g0218 1113 SMART pas_2 737 807 IPR000014 -
Lan16g0218 1113 SMART gaf_1 212 399 IPR003018 GO:0005515
Lan16g0218 1113 ProSiteProfiles Histidine kinase domain profile. 886 1106 IPR005467 -
Lan16g0218 1113 PRINTS Phytochrome signature 127 149 IPR001294 GO:0006355|GO:0009584
Lan16g0218 1113 PRINTS Phytochrome signature 227 246 IPR001294 GO:0006355|GO:0009584
Lan16g0218 1113 PRINTS Phytochrome signature 312 333 IPR001294 GO:0006355|GO:0009584
Lan16g0218 1113 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Lan16g0218 1113 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Lan16g0218 1113 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Lan16g0218 1113 PRINTS Phytochrome signature 607 623 IPR001294 GO:0006355|GO:0009584
Lan16g0218 1113 PRINTS Phytochrome signature 626 641 IPR001294 GO:0006355|GO:0009584
Lan16g0218 1113 PRINTS Phytochrome signature 700 717 IPR001294 GO:0006355|GO:0009584
Lan16g0218 1113 PRINTS Phytochrome signature 720 740 IPR001294 GO:0006355|GO:0009584
Lan16g0218 1113 Gene3D PAS domain 751 859 - -
Lan16g0218 1113 SMART HKATPase_4 991 1104 IPR003594 -
Lan16g0218 1113 TIGRFAM sensory_box: PAS domain S-box protein 611 726 IPR000014 -
Lan16g0218 1113 CDD HisKA 879 935 IPR003661 GO:0000155|GO:0007165
Lan16g0218 1113 Gene3D - 394 567 IPR043150 -
Lan16g0218 1113 Gene3D PAS domain 602 726 - -
Lan16g0218 1113 Gene3D PAS domain 67 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0218 Lan-Chr16 1716826 1723208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0218 14 1104 Histidine Kinase Gene Family AT4G16250 73.279 0.0 1702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0218 K12121 - gmx:100799831 1921.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0821 19 14695289 14700162 Lan16g0218 16 1716826 1723208 LSH